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Brainhack 2016 Project Reports
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Edited by Jörg Pfannmöller, Cameron Craddock, Pierre Bellec, Daniel Margulies, Nolan Nichols

Brainhack 2016 features short reports on neuroscience tools and projects that embody the ethos of open science. This is a series of project reports from 2016 Brainhack events. For more information please see: http://brainhack.org

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Tools Matter: Comparison of Two Surface ...
Project Report
Published in: Research Ideas and Outcomes
Tools Matter: Comparison of Two Surface Analysis Tools Applied to the ABIDE Dataset
    Erin Dickie, Steven Hodge,     R. Craddock, Jean-Baptiste Poline,     David Kennedy
10.3897/rio.3.e13726
 17-05-2017
 Unique: 3859 | Total: 7591  | Access Period:
 Reprint: € 3,00
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Semi-automated Robust Quantification ...
Project Report
Published in: Research Ideas and Outcomes
Semi-automated Robust Quantification of Lesions (SRQL) Toolbox
    Kaori L Ito, Julia Anglin, Hosung Kim, Sook-Lei Liew
10.3897/rio.3.e13395
 03-05-2017
 Unique: 3859 | Total: 7523  | Access Period:
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Gradients of cortical hierarchy in Autism
Project Report
Published in: Research Ideas and Outcomes
Gradients of cortical hierarchy in Autism
    Richard Bethlehem,     Marcel Falkiewicz, Jan Freyberg, Owen Parsons, Seyedeh-Rezvan Farahibozorg, Charlotte Pretzsch, Bjoern Soergel, Daniel Margulies
10.3897/rio.3.e13391
 02-05-2017
 Unique: 4056 | Total: 8466  | Access Period:
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Streamlining the Process of 3D Printing ...
Project Report
Published in: Research Ideas and Outcomes
Streamlining the Process of 3D Printing a Brain From a Structural MRI
Daniel Peterson
10.3897/rio.3.e13394
 02-05-2017
 Unique: 3585 | Total: 6825  | Access Period:
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Developing predictive imaging biomarkers ...
Project Report
Published in: Research Ideas and Outcomes
Developing predictive imaging biomarkers using whole-brain classifiers: Application to the ABIDE I dataset
Swati Rane, Eshin Jolly, Anne Park, Hojin Jang,     Cameron Craddock
10.3897/rio.3.e12733
 20-03-2017
 Unique: 5022 | Total: 9661  | Access Period:
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Noise paradoxically increases reliability ...
Project Report
Published in: Research Ideas and Outcomes
Noise paradoxically increases reliability metrics
Jingyuan Chen, Deepika Bagga
10.3897/rio.3.e12641
 13-03-2017
 Unique: 3255 | Total: 6545  | Access Period:
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How much motion is too much motion? Determining ...
Project Report
Published in: Research Ideas and Outcomes
How much motion is too much motion? Determining motion thresholds by sample size for reproducibility in developmental resting-state MRI
Julia Leonard, John Flournoy, Christine Paula Lewis-de los Angeles,     Kirstie Whitaker
10.3897/rio.3.e12569
 08-03-2017
 Unique: 6244 | Total: 11364  | Access Period:
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Cluster-viz: A Tractography QC Tool
Project Report
Published in: Research Ideas and Outcomes
Cluster-viz: A Tractography QC Tool
Kesshi Jordan,     Anisha Keshavan, Maria Luisa Mandelli, Roland Henry
10.3897/rio.3.e12394
 24-02-2017
 Unique: 4521 | Total: 9373  | Access Period:
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Generating and reporting peak and cluster ...
Project Report
Published in: Research Ideas and Outcomes
Generating and reporting peak and cluster tables for voxel-wise inference in FSL
    Camille Maumet,     Thomas Nichols
10.3897/rio.3.e12368
 24-02-2017
 Unique: 8393 | Total: 14126  | Access Period:
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Interactive online brain shape visualization
Project Report
Published in: Research Ideas and Outcomes
Interactive online brain shape visualization
    Anisha Keshavan,     Arno Klein, Ben Cipollini
10.3897/rio.3.e12358
 23-02-2017
 Unique: 5522 | Total: 10159  | Access Period:
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Laminar Python: tools for cortical depth-resolved ...
Project Report
Published in: Research Ideas and Outcomes
Laminar Python: tools for cortical depth-resolved analysis of high-resolution brain imaging data in Python
    Julia Huntenburg, Konrad Wagstyl,     Christopher Steele, Thomas Funck,     Richard Bethlehem, Ophélie Foubet, Benoit Larrat, Victor Borrell, Pierre-Louis Bazin
10.3897/rio.3.e12346
 23-02-2017
 Unique: 4404 | Total: 8467  | Access Period:
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Loading and plotting of cortical surface ...
Project Report
Published in: Research Ideas and Outcomes
Loading and plotting of cortical surface representations in Nilearn
    Julia Huntenburg, Alexandre Abraham, João Loula, Franziskus Liem, Kamalaker Dadi, Gaël Varoquaux
10.3897/rio.3.e12342
 23-02-2017
 Unique: 6602 | Total: 12175  | Access Period:
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Mindcontrol: Organize, quality control, ...
Project Report
Published in: Research Ideas and Outcomes
Mindcontrol: Organize, quality control, annotate, edit, and collaborate on neuroimaging processing results
    Anisha Keshavan,     Christopher Madan, Esha Datta, Ian McDonough
10.3897/rio.3.e12276
 15-02-2017
 Unique: 3748 | Total: 7846  | Access Period:
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Semi-automated Robust Quantification ...
Project Report
Published in: Research Ideas and Outcomes
Semi-automated Robust Quantification of Lesions (SRQL) Toolbox
    Kaori Ito, Julia Anglin, Sook-Lei Liew
10.3897/rio.3.e12259
 14-02-2017
 Unique: 3295 | Total: 6480  | Access Period:
 Reprint: € 5,00
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Gentoo Linux for Neuroscience - a replicable, ...
Software Management Plan
Published in: Research Ideas and Outcomes
Gentoo Linux for Neuroscience - a replicable, flexible, scalable, rolling-release environment that provides direct access to development software
Horea-Ioan Ioanas, Bechara Saab, Markus Rudin
10.3897/rio.3.e12095
 07-02-2017
 Unique: 5591 | Total: 16452  | Access Period:
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