Collections

Critical environmental challenges affect aquatic ecosystems worldwide, and the need to coordinate research efforts is increasingly urgent. Mesocosms are key Research Infrastructures (RIs) allowing the study of highly complex environments comparable to natural ecosystems. Mesocosm experiments, which offer controlled yet realistic settings, are crucial for understanding and mitigating the impact of various stressors and their combinations on aquatic ecosystems. The AQUACOSM-RI consortium, comprising over 60 individual state-of-the-art mesocosm facilities at 28 host institutions across Europe, has therefore been instrumental in advancing aquatic environmental research across climate zones including marine, brackish and freshwater ecosystems.

The AQUANAVI project (Navigating Grand Challenges and their Mitigation using Aquatic Experimental RIs) aims to create an interactive atlas of aquatic mesocosm-based experimental research. Data, publications, reports and information generated by the AQUACOSM consortium and other mesocosm facilities worldwide will be integrated into a single, accessible platform incorporating Open Knowledge Maps' AI-driven visual discovery tools. The project will foster collaborations and, by enhancing data FAIRness, it will facilitate fast discovery and efficient use of aquatic RIs globally, accelerating the development of environmental mitigation strategies.

Critical environmental challenges affect aquatic ecosystems worldwide, and the need to coordinate research efforts is increasingly urgent. Mesocosms are key Research Infrastructures (RIs) allowing the study of highly complex environments comparable to natural ecosystems. Mesocosm experiments, which  ...

The European Union's 2030 Biodiversity Strategy aims to place species and ecosystems on the recovery path by 2030, preserving and restoring Europe's natural capital, and positioning Europe at the forefront of global biodiversity conservation efforts. These commitments urgently respond to the decline of species and the deterioration of nature. A key component of this Strategy is the development of a Trans-European Nature Network (TEN-N) that protects ecosystems and their contributions to people against threats from climate change and unsustainable land use. The TEN-N is expected to increase the resilience of natural ecosystems, supported by the existing Natura 2000 Network and other nationally designated protected areas. New designations are expected to contribute to achieving protected land, including inland waters, comprising 30% of the territory, increasing the network's ecological representativeness, and incorporating novel strictly protected and ecological connectivity areas. Implementing the TEN-N faces major challenges in defining criteria and planning tools to maximize the network's representativeness and connectivity at the European level.

The TEN-N should create a functionally connected system, assimilating biodiversity conservation goals with nature-based solutions for societal needs, such as green and blue infrastructure. In the face of global change, the Network should also ensure that species communities can adapt, providing sufficient and connected spaces for nature. Achieving these goals requires innovative planning approaches, integrating models of biodiversity and ecosystem change with conservation prioritization tools and participatory processes. The TEN-N must be based on SMART (specific, measurable, attainable, relevant, and time-bound) conservation and management objectives and monitoring methods.

NaturaConnect aims to support the development of the TEN-N through transdisciplinary research. Participatory processes are central to its activities, involving stakeholder engagement at regional, national, and international levels. Predictive biodiversity and ecosystem service models form the backbone for analyzing protected area representativeness and connectivity, taking into account multiple prioritization criteria and the diverse perspectives and needs of nature conservation. NaturaConnect seeks to develop data, analytical tools, and knowledge to support solutions —namely, the blueprint for TEN-N configurations. It also analyses best practices for governance of area-based conservation measures and potential funding mechanisms to provide the European Commission and Member States with a comprehensive set of planning and implementation support tools.

Only publications directly resulting from the NaturaConnect project are accepted in this collection.

The European Union's 2030 Biodiversity Strategy aims to place species and ecosystems on the recovery path by 2030, preserving and restoring Europe's natural capital, and positioning Europe at the forefront of global biodiversity conservation efforts. These commitments urgently respond to the decline ...

The mission of the Earth Metabolome Initiative is to reveal and safeguard the life-sustaining chemistry of all known species on Earth, map its patterns and functions, and make this knowledge open.

The largely unexplored metabolic diversity of life on Earth, which orchestrates living systems and supports human health and nutrition, is disappearing rapidly as species go extinct. The Earth Metabolome Initiative aims to launch an unprecedented collaborative global sampling and digitization effort to reveal and preserve this vital natural resource. We will develop resources and technologies to accelerate global metabolome discovery for the benefit of human societies and protection of biodiversity. We will make our findings open, accessible and interoperable within an electronic resource that will connect metabolites with their roles in living systems, functional networks and importance for human societies. This will constitute an Earth Metabolome Knowledge Base for sustainable innovations now and in future. We will thus achieve the following scientific, societal and environmental aims:

1. Advance life sciences by systematically expanding knowledge on global chemodiversity and placing it in the context of biosphere processes and functions.

2. Benefit human society through the development of novel, sustainable solutions in agriculture, medicine and other fields. 3. Protect biodiversity by providing critical information for monitoring, developing novel metrics, and informing predictive tools to prioritize protection and incentivising conservation.

The Digital Botanical Gardens Initiative (https://www.dbgi.org/) has been designed as a pilot for the EMI. 

This is the RIO topical collection gathering the research outcomes of the Earth Metabolome Initiative, feel free to propose your ideas and contribute!

The mission of the Earth Metabolome Initiative is to reveal and safeguard the life-sustaining chemistry of all known species on Earth, map its patterns and functions, and make this knowledge open.

The largely unexplored metabolic diversity of life on Earth, which orchestrates living systems and s ...

The Digital Botanical Gardens Initiative (DBGI) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus is placed on the large scale characterization of the chemodiversity of living plants collections through mass spectrometric approaches. The acquired data is structured, organized and connected with relevant metadata through semantic web technology. The gathered knowledge can then be exploited to inform ecosystem functioning research and orient biodiversity conservation projects. The DBGI initially aims to take advantage of the readily available living collections of Swiss botanical gardens to establish robust and scalable chemo- and biodiversity digitization workflows. The ultimate goal is to apply these approaches in the field and at the global scale in wild ecosystems. In this sense, the DBGI is a pilot for the larger Earth Metabolome Initiative (EMI) see https://www.earthmetabolome.org/

This topical collection will gather and share the reserach outcomes of the DBGI.

The Digital Botanical Gardens Initiative (DBGI) ambitions to explore innovative solutions for the collection, management and sharing of digital information acquired on living botanical collections. A particular focus is placed on the large scale characterization of the chemodiversity of living plant ...

Natural science collections are a treasure trove of data that are pivotal in finding solutions from and for nature; from conservation, health, minimising the degradation of natural capital and finding new sources of critical minerals, to addressing the challenges of food security, water scarcity and the impact of natural disasters.

The Distributed System of Scientific Collections (DiSSCo) is a pan-European Research Infrastructure (RI) that aims to digitally unify natural science collections - some 1.5 billion specimens - from 175 museums, botanical gardens, and universities across 23 countries in a distributed infrastructure that makes these collections physically and digitally open and accessible for all forms of research and innovation. DiSSCo’s preparatory phase ran from January 2020 to February 2023. This collection of articles highlights the major outputs of the DiSSCo Prepare project, which address five aspects of implementation readiness: the technical, scientific, data, organisational and financial readiness levels.

Natural science collections are a treasure trove of data that are pivotal in finding solutions from and for nature; from conservation, health, minimising the degradation of natural capital and finding new sources of critical minerals, to addressing the challenges of food security, water scarcity and ...

The European Union has established the European Science Open Cloud (EOSC), as the “system of systems” Infrastructure where scientists, stakeholders and other types of users can find data, analytical web services, publications, networks and other research resources to carry out their work.

The ESFRI Research Infrastructures form five thematic Science Clusters within the EOSC ecosystem: ENVRI FAIR on the Environment, EOSC Life for the Life and Biomedical Sciences, PANOSC for the Photon and Neutron, SSHOC for the Social Sciences and Humanities and ESCAPE for the Astronomy & Particle Physics. These Clusters are critical to the development of the EOSC integrated environment for the provision of the research resources, whose integration, composition and use by their communities will undoubtedly enhance the emerging EOSC infrastructure. They also provide examples of how shared projects, the Science Projects, can contribute to addressing major societal challenges for Europe and demonstrate how Research Infrastructures can align to support Horizon Europe's missions within EOSC.

This collection of articles highlights the major outputs of these EOSC Future Science Projects: their planning, implementation and the engagement of the relevant scientific community.

The European Union has established the European Science Open Cloud (EOSC), as the “system of systems” Infrastructure where scientists, stakeholders and other types of users can find data, analytical web services, publications, networks and other research resources to carry out their work.

The ESF ...

This collection hosts outcomes and products from the COST Action CA20125 ParAqua "Applications for zoosporic parasites in aquatic ecosystems".

The Action is funded by the EU (2021-2024) and aims to organise and coordinate an innovative and dynamic European network connecting academia, industry and water management authorities to advance and apply knowledge and expertise on zoosporic parasites (i.e. aquatic fungi and fungi-like microorganisms) and the relation with their hosts in natural and industrial systems.

Zoosporic parasites cause severe host mortality, the economic impacts of parasitic diseases are notable in microalgae biotech industry, affecting production of food ingredients, biofuels, pharma- and nutraceuticals. But zoosporic parasites also constitute important drivers of natural populations, potentially influencing aquatic food webs and community dynamics, including maintaining and promoting diversity.

Main aim and objective of the Action is to organise and coordinate an innovative and dynamic Network connecting academia, industries and water management authorities to advance and apply knowledge and expertise on zoosporic parasites and the relation with their hosts in natural ecosystems and industrial algal biotech production.

The collection includes a range of different outputs and products, including the Grant Proposal (MoU), the Data Management Plan, the Action dissemination products, reports, protocols, methodologies, and research papers.

This collection hosts outcomes and products from the COST Action CA20125 ParAqua "Applications for zoosporic parasites in aquatic ecosystems".

The Action is funded by the EU (2021-2024) and aims to organise and coordinate an innovative and dynamic European network connecting academia, industry an ...

The Horizon 2020 project Biodiversity Community Integrated Knowledge Library (BiCIKL) builds a new European community of key research infrastructures, researchers, citizen scientists and other stakeholders in biodiversity and life sciences. Together, the BiCIKL 14 partners solidify open science practices by providing access to data, tools and services at each stage of and along the entire biodiversity research life cycle (specimens, sequences, taxonomic names, analytics, publications, biodiversity knowledge graph).  

BiCIKL has a special emphasis on biodiversity literature and develops new methods and workflows for semantic publishing and integrated access to harvesting, liberating, linking, and re-using of sub-article-level data extracted from the published content. 

The main challenge of BiCIKL is to design, develop and implement a FAIR Data Place (FDP), a central tool for search, discovery and management of interlinked FAIR data across different domains. The key final outputs of BiCIKL is the Biodiversity Knowledge Hub (BKH), a one-stop portal, providing access to the BiCIKL services, tools and workflows, beyond the lifetime of the project.

The Horizon 2020 project Biodiversity Community Integrated Knowledge Library (BiCIKL) builds a new European community of key research infrastructures, researchers, citizen scientists and other stakeholders in biodiversity and life sciences. Together, the BiCIKL 14 partners solidify open science pr ...

Research Ideas and Outcomes (RIO Journal) invites submissions of research outcomes - especially early and brief results - relevant to the COVID-19 pandemic in light of the unprecedented health emergency and the scale of its worldwide impact on society, industry and economics.

By means of Open Science, we aim to contribute with real-time findings and data to the efforts of scientific teams, experts and other decision-makers across the globe, in order to minimise the damage and eventually bring the end to the current crisis, and even more importantly, prevent similar situations in the future. Published research ideas and brief results are also expected to bring up crucial discussion, thereby facilitating actions and collaborations in the fight against devastating health emergencies.

Especially encouraged are submissions focused on the long-term effects of COVID-19. Considered are publications across disciplines, including medicine, ethics, politics, economics etc. at a local, regional, national or international scale. Accepted publication types include: Research articles, Research Idea, Case Study, Clinical Case Study, Data Paper, Forum Paper, Methods, Questionnaire, R Package, Software Description, Workshop Report, Project Report, Research Poster, Research Presentation, Short Communication, Single-media Publication (e.g. infographics), Data Review.

We also encourage publication of research ‘bundles’, where conventional papers are published along with raw research outputs (e.g. data, case studies, presentations, etc.), to better contextualise the work and facilitate further contribution by other scientists.

Research Ideas and Outcomes (RIO Journal) invites submissions of research outcomes - especially early and brief results - relevant to the COVID-19 pandemic in light of the unprecedented health emergency and the scale of its worldwide impact on society, industry and economics.

By means of Open Science ...

This collection hosts outputs from the FP7-funded EU project Building the European Biodiversity Observation Network (EU BON). The project proposes an innovative approach in terms of integration of biodiversity information systems from on-ground to remote sensing data, for addressing policy and information needs in a timely and customized way.

This collection hosts outputs from the FP7-funded EU project Building the European Biodiversity Observation Network (EU BON). The project proposes an innovative approach in terms of integration of biodiversity information systems from on-ground to remote sensing data, for addressing policy and infor ...