Research Ideas and Outcomes :
Workshop Report
|
Corresponding author: Andrea Weeks (aweeks3@gmu.edu)
Received: 30 Apr 2024 | Published: 20 May 2024
© 2024 Andrea Weeks, Elizabeth Collins, Twanelle Majors, Zack Murrell, Deborah Paul, Matthew Sheik, David Shorthouse, Shawn Zeringue-Krosnick
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Weeks A, Collins E, Majors TW, Murrell ZE, Paul DL, Sheik M, Shorthouse DP, Zeringue-Krosnick S (2024) Workshop Report: Supporting inclusive and sustainable collections-based research infrastructure for systematics (SISRIS). Research Ideas and Outcomes 10: e126532. https://doi.org/10.3897/rio.10.e126532
|
We created and delivered a workshop and symposium series for biologists at all career stages focused on the skills and practices needed to sustain natural history specimen attribution and citation. The name of the workshop and symposium series, SISRIS, reflected our ultimate goal of effecting community-level change by sharing skills and practices that can support inclusive and sustainable (collections-based) research infrastructure for systematics. We report here the rationale for SISRIS, its learning objectives for participants and its results, including the assessment of outcomes from three iterations of the workshop held in 2023. The SISRIS workshops and symposia were held in person at the annual meeting of the Association for Southeastern Biologists in Winston-Salem, North Carolina and Botany 2023 in Boise, Idaho. A stand-alone SISRIS workshop was held online later to accommodate individuals who were unable to travel to the in-person events.
Bionomia, collections-based research, Extended Specimen Concept, natural history collections, SISRIS, systematics
Workshops were held in three venues. Two in-person workshops followed by symposia were held at the annual meeting of the Association of Southeastern Biologists (Winston-Salem, North Carolina; 25 March 2023) and Botany 2023 (Boise, Idaho; 25 July 2023). An online, workshop-only event was held 6 August 2023 via Zoom to accommodate individuals who could not attend in person.
Disseminating the workshop participant list is restricted by the Tennessee Technological University Institutional Review Board (IRB #2609). In accordance with stipulations for IRB exempt research, the project "Collaborative Research: Conference: Supporting inclusive and sustainable research infrastructure for systematics (SISRIS) by connecting scientists and their specimens" must ensure that any specific information regarding the identity of participants or their institutions are not shared in the dissemination of its results.
Scientific discoveries derived from natural history collections depend, first and foremost, on the people who create the foundation of preserved specimens. Their taxonomic expertise and continued contributions are essential to the long-term health of collections-based research. Yet, data indicate that this historical foundation is threatened despite continued calls to speed the discovery and description of species for a world that is rapidly losing them to extinction (
Scientists have advocated for the creation of better measures of professional productivity to strengthen the foundation of human resources needed to conduct biodiversity research in the 21st century (
One way for taxonomists to document their research impact is to use 21st century digital scholarship tools to quantify their direct contributions to collections. With these tools that interact with major biodiversity informatics databases, collectors and determiners can also track the contributions of their specimens to subsequent scientific discoveries and thereby document greater professional recognition of their work. These tools include the web-based services provided by the Open Researcher and Contributor ID initiative (
Central to these tools' functionality is the use of globally unique identifiers for the people who collect and identify scientific specimens. These are needed because ambiguity and inconsistency in the way a person's name is recorded as digitised metadata can limit the ability of informatics tools to make accurate attributions. For example, a collector could be referred to on specimen labels as "Helen Jones," "H. Jones," "Miss Jones" and "Mrs. John Smith" over the course of their life, yet informatics tools would regard these name strings as four different individuals. Linking separate name strings into one machine-interpretable knowledge graph through globally-unique identifiers creates a more complete representation of an individual's contributions and productivity. Additionally, for this purpose, Bionomia (Bionomia 2022) is an especially powerful informatics tool because it can be used by anyone to disambiguate names such as those in the example above.
Building community awareness of the new informatics tools and attribution practices are essential to increasing the visibility of collections-based researchers and their scientific contributions. The goal is to establish a virtuous circle within the community of people who create or use natural history collections in their research. Each person would:
However, there is a lack of awareness and understanding by individuals at all career stages about these tools and practices, which poses a barrier to reaching the critical mass of people necessary to start and sustain new community standards of practice. Students ask, "What are these tools? And do I qualify to use them?". Professionals in early and mid-career stages lament, "Why should I join more science networking sites? I am too pressed for time as it is". Senior-career individuals respond, "Why should I bother with new tools? My career has been productive without them".
In an effort to overcome the barriers to embracing biodiversity informatics best practices, we created a workshop and symposium series for early-career and established scientists in the skills and practices needed to sustain natural history specimen attribution and citation. The name of the workshop and symposium series, SISRIS, reflected our main goal of effecting community-level change by sharing skills and practices that can support inclusive and sustainable (collections-based) research infrastructure for systematics (Fig.
Promotional graphic for the SISRIS project used in online and print advertisements for the workshop and symposium. The QR-code leads to the SISRIS project site, https://github.com/aweeks3/SISRIS/. The graphic was created by Shawn Zeringue-Krosnick and Andrea Weeks and is shared under the Creative Commons licence CC BY 4.0.
Accurate attributions increase the research value of the specimens because they can be used to cross-reference collecting events, taxonomy or geographical details, to locate and connect related specimens across institutions and to uncover events in the history of science (
Few recent workshops to our knowledge have broached the challenge of changing the way collections-based research is measured, made visible and acknowledged by others at a community-level (Table
List of recent workshops that have incorporated one component of training, Bionomia. No prior workshop to our knowledge has matched the entire set of learning objectives of the SISRIS workshop/symposium series.
|
The half-day workshop format comprised four hours of instruction about the application of the web-based informatics tool Bionomia and the other software services that interact with this platform, including ORCID, GBIF, Wikidata and Zenodo (Table
Workshop learning objectives and the activities that participants undertake to achieve them.
By the end of the workshop, participants will be able to explain and/or demonstrate that:
|
|
Workshops were held in three venues. Two in-person workshops, followed by symposia, were held at the annual meeting of the Association of Southeastern Biologists (Winston-Salem, North Carolina; 25 March 2023) and Botany 2023 (Boise, Idaho; 25 July 2023). Participants of in-person workshops were offered a stipend to defray the cost of travel (325 to 1000 USD), which was provided by a US National Science Foundation conference award (Grant No. 2247631 and 2247632). An online workshop-only event was held on 6 August 2023 via Zoom to accommodate individuals who could not attend in person. The workshops and symposia were advertised widely by the professional societies participating in the meetings and via social media. A promotional graphic that included a QR-code to the SISRIS project web page and registration site (Fig.
Workshop assessment was approved by the Tennessee Technological University Institutional Review Board and conducted using Qualtrics. Assessment activities took place during participant registration, immediately after each workshop event and 60 days afterwards to assess longitudinal effects. For the purpose of assessment, participants were categorised in one of two cohorts: junior-level (undergraduate students through post-doctoral researchers) or senior-level (early-career through retired). Attendance was used to assess the success of the symposia.
Fifty-three workshop participants comprised two (4%) undergraduate students, five (9%) masters students, fifteen (28%) doctoral students, one (2%) post-doctoral researcher, twelve (23%) early-, thirteen (25%) mid- and four (8%) late-career professionals and one (2%) retired individual. The junior-level cohort (n = 23) was smaller than the senior-level cohort (n = 30). The 53 participants included 51 unique individuals because two individuals participated in both in-person workshops. Amongst participants who reported their gender, race and ethnicity, 36 (68%) were female, 15 (28%) male and two (4%) non-binary. Of these individuals, 17 (32%) were minority (e.g. non-white) and three (6%) were Hispanic. Each workshop increased the geographic diversity of the participants, as determined by their institutional address or, if unspecified, home address (Fig.
Geographic affiliation of SISRIS workshop participants, symposium speakers and project personnel as determined by their institutional address or, if unspecified, home address. A) Participants of the SISRIS workshop held at ASB 2023 in Winston-Salem, North Carolina USA, 24 March 2023; (n = 20). B) Participants of the SISRIS workshop held at Botany 2023 in Boise, Idaho USA, 23 July 2023; (n = 27). C) Participants of the SISRIS workshop held online via Zoom on 6 August 2023; (n = 6). D) All SISRIS workshop participants, (n = 53). E) All invited speakers of the SISRIS symposia held at ASB 2023 and Botany 2023, (n = 14). F) All SISRIS workshop participants, symposium speakers and project personnel in 2023, (n = 59 different individuals).
Assessment data show that the workshops trained people who had significant financial barriers to obtaining this type of professional development. For instance, 51% of in-person workshop participants reported that the participation stipends were definitive in allowing them to attend the conference. Moreover, 22% of in-person workshop participants reported that the stipend was definitive in attracting them to participate in the workshop. The positive effect of the participation stipend on conference attendance was stronger amongst junior individuals (undergraduate students through post-doctoral researchers; 68%) as compared to senior individuals (early-career through retired; 35%). However, both groups reported equivalent levels of being attracted to participate in the workshop because of the stipend (22% and 23%, respectively).
As our assessment data show, workshops were effective training experiences for participants. The workshop registration process alone improved the ability of participants to document their own contributions to research. For example, 26% of the workshop participants obtained their ORCID because of workshop registration activities. Amongst junior-level participants, this percentage was 43%, whereas it was 13% for senior-level participants.
At the end of the workshops, most participants reported substantial gains in their understanding of the use of biodiversity informatics tools (Fig.
Participants' free-response answers to assessment questions reveal the scope of the insights that they developed as a consequence of attending the workshops. In response to the query, "What was the most surprising or interesting thing that you learned at the workshop?", three direct quotes illustrate these types of insights: "That I can get a DOI for my own collections that I can use to advocate [for] the importance of collections and the work [I] do with them (especially to admins!)"; "I did not realise the scope of SISRIS to be able to attribute to collectors that have passed. The breadth of this was incredible. For example, my undergraduate research was entirely based on the floristic work of Emma Jane Cole of Michigan, who is one of the women on the SISRIS list. If we had Bionomia during my undergraduate [time], our work would have been very streamlined. This is wonderful to add to the floristic/herbarium community"; and "How to create a Wikidata page for a person who is no longer alive, this will be a wonderful asset to our herbarium by being about to put information about our collections in a publicly accessible place rather than a document on one person's computer". A thematic evaluation of all free-response answers (Table
Queried at each workshop conclusion: What was the most surprising or interesting thing that you learned at the workshop?
Queried two months after each workshop: In retrospect, what was the most valuable thing that you learned from the workshop?
|
In comparing junior-level participants with senior-level participants, additional themes were identified (Table
Themes from free-response comments by workshop participants that unite or distinguish junior and senior-level cohorts.
|
The positive long-term effects of training are also revealed by participants' self-reporting measured 60 days after the workshops ended (Fig.
An unexpectedly strong outcome of training is the degree to which participants shared knowledge or skills they learned at the workshops with others afterwards (Fig.
During the workshops, participants improved the records for 90,492 herbarium specimens with attributions for 135 different collectors and identifiers using Bionomia, including 95 historical collectors from under-represented groups. In some cases, workshop participants attributed their own specimens (e.g. herbarium specimens they created or identified) to quantify their contributions and to augment their institution's research impact. Senior individuals were more productive using Bionomia during the workshop than junior individuals. They worked on more collectors and/or identifiers on average (four vs. two people) and attributed more specimens on average (2923 vs. 643 specimens). Both senior and junior participants worked on the same number of under-represented collectors/identifiers (two), but senior participants were still more productive on average (1654 vs. 527 specimens). The causes underlying this performance difference may include senior participants' more extensive personal collections needing attribution, their greater experience in evaluating historical specimen labels and their adoption of bulk-attribution methods within Bionomia.
Based on feedback from the first workshop, we expanded the training module for creating Wikidata entries for deceased collectors or identifiers in subsequent workshops. A number of participants knew of other historical individuals that needed Wikidata Q-numbers in order to attribute their specimens within Bionomia. This turned out to be a well-received improvement in the following workshops (Table
The symposia comprised nine and ten invited speakers at the in-person conferences, respectively (Table
Association of Southeastern Biologists 2023:
Botany 2023
|
The enthusiastic response to the SISIRIS initiative by workshop participants, symposium speakers and audience members indicates that it tapped into a need within the community to learn, to share and to discuss how people-data facilitate specimen-based research. For example, we had to expand the length of each symposium to accommodate a greater number of speakers than originally anticipated due to the widespread interest amongst researchers we approached to present their work. SISRIS events included people from the majority of US States (Fig.
The strongest outcome of the SISRIS initiative is the degree to which workshop participants once trained have continued to share their new knowledge with others. The long-tail effect of training was an intended goal of the workshop and is one that, in our opinion, has the best chance of building community-level awareness of 21st century informatics tools and attribution practices. After the last round of formal assessments that documented widespread dissemination on the part of participants 60 days after the workshops, one alumna has created a scientific presentation about the impact of Bionomia training (
The SISRIS project will hold its final, grant funded workshop 16 June 2024 at the Botany 2024 conference in Grand Rapids, Michigan. Future work will include creating a white-paper about the need for continuing professional development regarding the opportunities presented by the Extended Specimen concept, including people-data and disseminating this model of training to other domain-specific groups of collections-based researchers, curators and students.
This material is based upon work supported by the US National Science Foundation under Grant No. 2247631 and 2247632.
US National Science Foundation, Division of Biological Infrastructure.
"Collaborative Research: Conference: Supporting inclusive and sustainable research infrastructure for systematics (SISRIS) by connecting scientists and their specimens". Grant No. 2247631 and 2247632.
Bionomia is a project developed and maintained by co-author David P. Shorthouse. It does not form part of his official duties as Biodiversity Data Manager with Agriculture and Agri-Food Canada.