Research Ideas and Outcomes :
Forum Paper
|
Corresponding author: Franziska Taubert (franziska.taubert@ufz.de), Thomas Banitz (thomas.banitz@ufz.de)
Academic editor: Marina Golivets
Received: 28 Mar 2024 | Accepted: 06 Jun 2024 | Published: 20 Jun 2024
© 2024 Franziska Taubert, Tuomas Rossi, Christoph Wohner, Sarah Venier, Tomáš Martinovič, Taimur Khan, Julian Gordillo, Thomas Banitz
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Taubert F, Rossi T, Wohner C, Venier S, Martinovič T, Khan T, Gordillo J, Banitz T (2024) Prototype Biodiversity Digital Twin: grassland biodiversity dynamics. Research Ideas and Outcomes 10: e124168. https://doi.org/10.3897/rio.10.e124168
|
|
European grassland management has often favoured high production through frequent mowing and heavy fertilisation over biodiversity conservation, which is typically supported by less intensive management. Besides management, climate change and extremes are increasingly affecting grassland productivity and biodiversity, requiring timely adaptation of management practices. Here, we describe the development of a prototype Digital Twin (pDT) of grassland biodiversity dynamics intended to support researchers, farmers or regulatory decision-makers in monitoring the current state of selected grassland sites and projecting their future state under various management and climate scenarios.
ecological modelling, ecosystem service, ecosystem management, model-data fusion, high performance computing
Approximately 30% of Europe’s agricultural land area is covered by grassland (
Grassland farmers mostly favour production (i.e. high yields). Therefore, frequent mowing (up to six times per year) or high numbers of livestock and intense fertilisation are common practices on agriculturally used grassland sites. Such intensive management is often at the expense of plant diversity, as it likely favours the dominance of only a few grass species (and the suppression of forbs and legumes). By contrast, low to moderate management intensities rather favour plant diversity. Grassland sites of nature conservation areas, for example, are usually mowed only once or twice per year or are sparsely grazed. They can show a richness of hundreds of different plant species per hectare (
Consequently, well-established management practices may no longer be suitable to achieve their goals and may require adaptation. Farmers increasingly face the question of how best to manage their grassland to achieve high yields, while conserving (or enhancing) biodiversity and how to adapt management practices to climate change to secure both in the future. However, we still lack a comprehensive understanding of how grassland dynamics and biodiversity respond to changing anthropogenic, environmental and climatic drivers, even more so as these drivers interact. Scientific knowledge and insights gained from observations at specific locations or short-term experiments cannot be directly transferred to other sites with different environmental conditions and can hardly be used to project grassland dynamics under (uncertain) future conditions. Moreover, available observations on plant diversity and productivity in grasslands are still scarce and heterogeneously distributed across Europe. This complicates deriving generalisable knowledge and recommendations for action.
An important complement to observational and experimental studies are computational models of grassland dynamics. Especially mechanistic simulation models that capture relevant processes and drivers such as climate, soil conditions and management on grassland yield and plant diversity can help to close our knowledge gaps. Appropriately designed and analysed, these models can allow us to generally assess the role and importance of specific drivers and also to project dynamics under various (future) scenarios (
Our mission is a consistent scientific knowledge base on grassland dynamics and plant diversity under different environmental conditions. This will allow reliable recommendations for grassland management under prevailing (e.g. improving plant diversity while maintaining yields) and changing conditions (e.g. securing yield and plant diversity under climate extremes like drought).
Therefore, we develop a prototype Digital Twin (pDT) of grassland dynamics in terms of plant biomass and diversity of plant functional types (PFTs; grasses, forbs and legumes). The pDT allows end-users (e.g. farmers, regulatory decision-makers) to select a specific grassland site, monitor its current state (including uncertainty measures depending on data availability) and to project its future state under pre- or self-defined climate and management scenarios. The pDT so far considers management by mowing, fertilisation and irrigation; it will be extended for grazing.
Although the ultimate end-users will be farmers and regulators, our primary audience at the current stage of pDT development are grassland researchers. Besides advancing the pDT workflow and implementation, we aim to improve its predictive capacity and accuracy for specific sites. Therefore, a close exchange with grassland experts and researchers managing observation sites (as organised in the Integrated European Long-Term Ecosystem, critical zone and socio-ecological Research infrastructure eLTER) is crucial.
The grassland biodiversity pDT workflow includes retrieving and processing required data, running simulations with the model GRASSMIND (cf. Model), exploring the simulation output by users and comparing simulation output with observation data (Fig.
Data category |
Streamed variables |
Calculated variables |
Temporal resolution |
Data source |
Input, weather |
Precipitation, Air temperature (at 2 m), Dewpoint temperature (at 2 m), Surface solar radiation downwards, Surface net solar radiation, Soil heat flux density, Eastward wind component (at 10 m), Northward wind component (at 10 m), Surface pressure |
Photosynthetically active radiation, Potential evapotranspiration |
Daily (for full time period to be simulated) |
Copernicus ERA5-Land ( |
Input, soil |
Silt fraction, Clay fraction, Sand fraction |
Mean over soil depth 0-200 cm |
None |
SoilGrids 2.0 ( |
Input, soil |
Field capacity, Permanent wilting point, Soil porosity, Saturated hydraulic conductivity |
Mapping from six SoilGrids depth layers to 20 GRASSMIND depth layers (both cover 0-200 cm soil depth) |
None |
HiHydroSoil v2.0 ( |
Input, management |
Mowing events |
Dates (2017-2021) |
Copernicus Land Monitoring Service High Resolution Layer Grassland (https://land.copernicus.eu/en/products/high-resolution-layer-grassland; available in Q3 2024 according to roadmap) |
|
Input, management |
Mowing events |
Dates (2017-2022) |
Regional maps for Germany ( |
|
Observation, vegetation |
Cover, Abundance, Biomass, Yield, Leaf area index |
Mapping from species to plant functional types (if applicable) |
Dates (one to several time points) |
eLTER data call |
Input data on weather, soil characteristics and grassland management events are required to run simulations with GRASSMIND. If available, observation data on grassland vegetation can be used for model validation, recalibration and further improvements. All data refer to the location of a grassland site or a particular plot to be simulated (i.e. spatial point coordinates). The target format of all input and observation data is described in a public guideline (
For observation data, we launched a call to data holders of all eLTER grassland sites. Responses to this call will be processed and suitable grassland vegetation datasets published (e.g.
The pDT employs the individual-based grassland model GRASSMIND (
The simulation results provide multiple vegetation characteristics at different organisational levels (individual plants, populations of PFTs, plant community) as time-series (daily resolution). We focus on output characteristics related to functional plant diversity and productivity (e.g. composition and biomass of different PFTs, Fig.
The pDT aims at a high level of FAIRness (
We expect to run tens of thousands GRASSMIND simulations to cover stochastic variation and to model many different grassland sites as well as climate and management scenarios, which will highly benefit from the parallel processing capabilities in LUMI-C. Test runs on LUMI were used to assess the number of single stochastic replicate simulations required for the same input data such that the mean outcome over all replicates becomes approximately invariant (160 replicates) and, thus, can be reasonably considered as representative (e.g. during model calibration). To illustrate the advantage of parallel processing, the runtime for preparing input files and simulating 160 instances of GRASSMIND (10 year simulation period, 1 m² area) is 8 minutes on a local machine without parallelisation, 2 minutes with parallelisation (10 cores), 25 seconds on a Windows-based HPC system Model Server Grid with parallelisation (56 cores) and 5 seconds on a single LUMI-C node (128 cores).
The pDT interface for end-user interaction is designed as an R Shiny App. End-users can submit the site location (spatial coordinates or Dynamic Ecological Information Management System (DEIMS) iD if the site is listed at the eLTER DEIMS Site and Dataset Registry,
To integrate climate projections developed by the Destination Earth initiative (
Some elements of the workflow can be used beyond the context of this grassland pDT. Such ‘generic building blocks’ include, for example, the scripts to retrieve location-specific weather data from the Copernicus ERA5-Land dataset (
The fully developed pDT, including technical implementation as well as robust reliable model projections, can serve as an information and decision-support tool for farmers and regulators, for example, to test different management regimes. To this end, expanding the pDT scope from few local sites to many or all grassland sites in larger regions (the scales of regulatory measures) and accounting for regional-scale effects of land-use change will be essential.
Scaling up the pDT to cover grassland sites across even larger regions, countries or Europe opens another perspective: comprehensive assessment of grassland dynamics in response to environmental factors (weather, soil, management). A Digital Twin map covering grasslands across Europe could reveal potentials and limits for yield, plant diversity or other variables of interest. Generalised relationships amongst these variables and between them and environmental conditions could be derived. The map could also help identify vulnerable sites that need specific attention (e.g. sites at risk of plant diversity and/or productivity loss that require protection or sites with high projection variability that require more monitoring).
At the core of the pDT, model predictions will be frequently checked with available observations. To avoid computationally expensive calibration for various local sites across Europe, the pDT shall capture grassland dynamics in a generic and regionally transferable manner. Therefore, one set of generic model parameters (especially the PFT traits) will be calibrated using observation data from multiple sites across Europe (from eLTER data call, cf. Data, Workflow) and model simulations for each site’s specific conditions at once (
This study has received funding from the European Union's Horizon Europe Research and Innovation Programme under grant agreement No 101057437 (BioDT project, https://doi.org/10.3030/101057437). Views and opinions expressed are those of the authors only and do not necessarily reflect those of the European Union or the European Commission. Neither the European Union nor the European Commission can be held responsible for them. We acknowledge the EuroHPC Joint Undertaking for awarding this project access to the EuroHPC supercomputer LUMI, hosted by CSC (Finland) and the LUMI consortium through a EuroHPC Development Access call.
Conceptualisation: TB, FT. Data Curation: TB, FT, SV, CW. Methodology: TB, FT, JLG, TR, TM, THK, CW. Software: TB, FT, TR, TM, THK. Supervision: TB, FT. Visualisation: TB, FT. Writing - original draft: TB, FT. Writing - review & editing: all co-authors.