Research Ideas and Outcomes :
Research Idea
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Corresponding author: Yousef R. Gaballah (yooungstar4@gmail.com)
Academic editor: Editorial Secretary
Received: 26 Mar 2024 | Accepted: 30 Jul 2024 | Published: 16 Aug 2024
© 2024 Yousef Gaballah
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Gaballah YR (2024) Using N2 as a final electron receptor in yeast to produce NH3 in bioreactors. Research Ideas and Outcomes 10: e124020. https://doi.org/10.3897/rio.10.e124020
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This research proposal aims for the replacement of N2 molecule (instead of O2) as a final electron receptor in micro-organisms so that they can produce NH3, which is important industrially, instead of H2O. This idea is based on the hypothesis that replacement of the central atom in gas-carrying compounds in living organisms such as chlorophyll, heme and hemocyanin would replace the fixed gas. However, NH3 is an expensive product because it is produced using the Haber-Bosch reaction technique which requires high temperature and pressure. Therefore, it is predictable here to produce NH3 so simply in bioreactors which is a great economic benefit.
nitrogen fixation; chlorophyll; heme; ammonia,ferrochelatase and adaptive mutation.
NH3 (ammonia or azane gas) is an important product; it has a number of vital uses such as fertilisers, cleaners, fermentation industry and antimicrobial agent in food products. NH3 is currently produced using the Haber-Bosch reaction technique which requires high temperature (400-500°C) and pressure (150-250 bar) which is why it is so expensive, so the production of ammonia gas in our proposed way would provide a great economic benefit.
Photosynthesis and respiration are two vital processes that are the prerequisites for all life on Earth. The two pigments responsible for these processes are chlorophyll and heme, respectively. The so-similarity between chlorophyll and heme has been a mysterious subject of research by some researchers for a long (
O2 is fixed by living organisms to be used as a final electron receptor, to be turned into H2O. If we managed to replace O2 by N2 in yeast (because yeast contains heme) and green bacteria, we are going to obtain NH3 and that is a real economic benefit. NH3 (ammonia or azane gas) is an important product; it has a number of vital uses such as fertilisers, cleaners, fermentation industry and antimicrobial agent in food products. NH3 is currently produced using the Haber-Bosch reaction technique which requires high temperature (400-500°C) and pressure (150-250 bar) which is why it is so expensive (
Heme is the compound that forms, with some proteins, haemoglobin, the compound that exists in red blood cells in most animals. It has the ability to deliver O2 and CO2. Its chemical structure is C55H72N4Fe. Hemocyanin is the compound that delivers O2 and CO2 in mollusc and arthropod species the same way hemin does, but less effectively. Its chemical structure is C55H72N4Cu. Chlorophyll is the compound that fixes O2 and CO2 in plants. It also absorbs sun light’s energy necessary for photosynthesis. Its chemical structure is C55H72N4Mg. Hemin has a semi-similarity with other compounds such as cobalamin (vitamin B12) which has the Co atom as a central atom in its structure.
Accurately, gases do not bind heme; as a whole, they bind only the central atom (iron) within it. It makes a sense that, if we managed to change the central atom in heme, the fixed gas would be changed. When we have breath in our lungs, only oxygen binds haemoglobin, not because oxygen is more suitable than other gases, but because of the central atom in heme, iron, which has a high affinity with oxygen.
Iron exists naturally in the form of oxides i.e. FeO, Fe2O3, Fe3O4. Copper, in hemocyanin, exists in nature in the form of oxides too i.e. Cu2O CuO, CuO2, Cu2O3. Magnesium, in chlorophyll, also interacts with oxygen and carbon dioxide easily. Therefore, our hypothesis is "Changing the central atom in haemoglobin, hemocyanin and chlorophyll, changes the fixed gas by them".
While some researchers managed to replace the central atom in chlorophyll with copper and zinc in vitro (
Ferrochelatase (or protoporphyrin ferrochelatase) is an enzyme which is encoded by the FECH gene in humans (
Although it is possible to replace the central atom in heme and chlorophyll, it looks very difficult to make specific genetic manipulations to reach the target of our proposal. Therefore, our goal can be possible if we follow an adaptive mutation technique. Adaptive mutation states that, rather than mutations and evolution being random, they are responsive to certain stresses. In other words, the mutations which happen are more beneficial and specific to the given stress, neither random nor a response to anything in particular. The term stress refers to any alteration in the environment, such as temperature, nutrients, population size etc. Tests with microorganisms have found that, for adaptive mutation, more of the mutations noted after a given stress were found to be more efficient at dealing with the stress than chance alone would suggest is possible (
Model of research:
On the other hand, mutation rate in prokaryotes, in general, is much higher than mutation rate in eukaryotes which is a disadvantage of using a yeast strain over using a bacterium strain as a model of study in this proposal. Therefore, it is proposed here to use a yeast strain and a bacterium strain at the same time to avoid the need to use any mutants that may induce unpredictable, undesired mutations. Torulopsis psychrophile, T. austromarina, L. gelidum and L. nivalis are examples for obligate aerobic yeasts (
Fe2+, Cu2+ and Co2+ are naturally selected by ferrochelatase, all lying in the fourth group of the periodic table. They are all bivalent and their electronegativity ranges from 1.83 to 1.90. Besides, they are all reactive to O2. Therefore, if we are to replace ferrous ions at the hemin of yeast, we should focus on an element that is:
As previously mentioned, Zn2+ is naturally selected by ferrochelatase (causing a disease in humans). Its electronegativity is 1.65 and it is reactive to N2 forming Zn3N2. Thus, Zn2+ looks to be perfect to be our first candidate to be replaced by ferrous ions in hemin. The electronegativity of Ni2+ is 1.91. It is reactive to N2 (forming Ni3N), so it would be a good fit to be our second candidate. At the third place, comes Mn2+. Its electronegativity equals 1.55. It is also reactive to N2 forming Mn3N5, Mn3N2 and MnN2.
Proposed experiment steps:
It is recommended to apply Biosafety Level 2 (BSL-2) (