Research Ideas and Outcomes :
Workshop Report
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Corresponding author: Maria Lumbierres (m.lumbierrescivit@uva.nl), W. Daniel Kissling (w.d.kissling@uva.nl)
Received: 06 Jul 2023 | Published: 11 Jul 2023
© 2023 Maria Lumbierres, W. Daniel Kissling
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Lumbierres M, Kissling WD (2023) Important first steps towards designing the freshwater, marine and terrestrial Essential Biodiversity Variable (EBV) workflows for the European Biodiversity Observation Network. Research Ideas and Outcomes 9: e109120. https://doi.org/10.3897/rio.9.e109120
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The EuropaBON project aims to co-design a European Biodiversity Observation Network by utilising Essential Biodiversity Variables (EBVs) as the foundation for its monitoring system. To co-design the workflow steps for each EBV, the project organised a virtual workshop to engage a diverse group of experts and stakeholders. The workshop focused on describing various workflow components, identifying future needs for EBV implementation and specifying the relative importance of different monitoring techniques for each EBV. With 520 participants from 49 countries, the workshop benefited from a large stakeholder engagement and a wide range of expertise across realms, EBV classes, monitoring techniques and workflow components. During the 3-day workshop (2 hours per day), participants captured different workflows components (i.e. data collection and sampling, data integration and modelling), specified current EU or national initiatives and identified emerging tools and future needs for all 70 currently proposed EBVs. By the end of the workshop, all 70 templates of EBV workflows contained details about workflow components and future needs. Specific future needs for data collection and sampling highlighted by participants were to increase sampling efforts (e.g. number of sites, geographic coverage, sampling frequency and taxonomic scope), to develop and better incorporate novel monitoring techniques (e.g. eDNA, remote sensing and digital sensors) and to create new or improved sampling designs at a European scale. For data integration, combining and harmonising data from diverse sources and data collectors and developing standards and protocols were mentioned as key needs. For modelling, participants especially highlighted the need to develop spatially-explicit models or improve other types of existing models, ideally with open-source software and code. Next steps for designing EBV workflows are to analyse the gathered workshop information, to provide detailed descriptions of EBV workflows and to formulate specific recommendations for the development of a European Biodiversity Observation Network. Recommendations for each monitoring technique (structured in-situ monitoring, citizen science, digital sensors, genetics, satellite remote sensing and aerial remote setting) will also be identified. The gathered information will contribute to the co-design of the European Biodiversity Observation Network and to supporting the establishment of a Biodiversity Monitoring Coordination Centre in Europe.
Essential Biodiversity Variables, biodiversity monitoring, EBV workflows, aata collection, data sampling, data integration, data modelling, monitoring techniques, GEO BON, stakeholder engagement
The EuropaBON virtual workshop on Essential Biodiversity Variable (EBV) workflows was held on 22–24 February 2023 during 2-hour online sessions from 11:00-13:00 h CET on each of the three workshop days.
Workshop lead:
Workshop supporters, moderators and facilitators:
Marija Milanovic (Helmholtz Centre for Environmental Research - UFZ)
Workshop participants:
The EuropaBON project (https://europabon.org/) aims to co-design a European Biodiversity Observation Network which can bridge the gap between the biodiversity data needs of policy-makers and authorities on the one hand and the existing reporting streams and available data sources on the other hand (
Through a comprehensive stakeholder and expert involvement, EuropaBON has identified 70 EBVs that are policy-relevant for the EU, measurable with available and existing technologies and with a proven track record of feasibility in on-going initiatives (
Representation of Essential Biodiversity Variables (EBVs) from the EuropaBON project. (a) Number of EBVs falling into the freshwater, marine and terrestrial realm, respectively. (b) Representation of EuropaBON EBVs within the six EBV classes as proposed by the Group on Earth Observations Biodiversity Observation Network (GEO BON). (c) Word cloud showing the taxonomic and ecosystem focus of the identified EBVs. The figure is based on the taxonomic and ecosystem groups mentioned in the full list of 70 EBVs (available from GitHub, accessed for this figure on 19 May 2023, https://github.com/EuropaBON/EBV-Descriptions).
The EuropaBON project emphasises a co-design approach with stakeholders at all stages of the development of the European Biodiversity Observation Network (
Besides, we also emphasise interoperability and IT infrastructure as important aspects for the co-design (Fig.
The co-design of the EBV workflows (orange box) is a central part for the co-design of an EU-wide biodiversity observation network. In the EuropaBON project, tasks from various work packages (yellow) feed information into the co-design of the EBV workflows (orange). Together with the Terms of Reference (ToR) for a permanent Biodiversity Monitoring Coordination Centre and a cost-benefit analysis (grey), the overall EuropaBON co-design of an EU-wide biodiversity observation network is developed.
To make the first steps towards co-designing the freshwater, marine and terrestrial EBV workflows for a European Biodiversity Observation Network, basic information on the three primary workflow components needs to be gathered (
Since there are large taxonomic, geographic and temporal gaps in existing European monitoring programmes (
The EuropaBON virtual workshop on EBV workflows was held during three consecutive days on 22–24 February 2023 (Fig.
Each day of the workshop started with a 10–30 min plenary session containing presentations and explanations for the day, followed by a 70–90 min break-out session for hands-on work and discussion and ended with a 20–30 min plenary session sharing the results from the break-out groups (see workshop agenda in Suppl. material
The overall aim of the workshop was to make the first steps in designing the freshwater, marine and terrestrial EBV workflows for a European Biodiversity Observation Network. More specifically, the workshop had the following objectives:
A total of 520 participants from 49 countries registered for the workshop. Between 200 and 300 people were connected during the online sessions on all three days. The expertise of the participants was well-distributed across terrestrial, marine, freshwater and marine ecosystems (Fig.
Summary of expertise from 520 stakeholders and experts who registered for the EuropaBON virtual workshop on EBV workflows (22–24 February 2023): (a) Expertise in terrestrial, freshwater, marine and coastal ecosystems and EBV classes (genetic composition, species populations, species traits, community composition, ecosystem functioning and ecosystem structure); (b) Expertise in workflow components (data collection and sampling, data integration, modelling) and aspects of interoperability and IT infrastructure; (c) Expertise in different monitoring techniques.
To describe the workflow components for each EBV, the participants worked on filling out workflow templates (provided as Google docs) for each EBV (i.e. 70 EBV templates in total). Before the workshop, some workflow templates were already populated with information available from other tasks and work packages in EuropaBON. For instance, information on current data collection and sampling from existing biodiversity monitoring initiatives was extracted from Deliverable 3.2 ‘Report on gaps and important new areas for monitoring in Europe’ (
Each EBV template was designed as a table, with columns for:
The rows represented the different workflow components, i.e. data collection and sampling, data integration and modelling. Additional sections at the bottom of each template allowed the participants to fill in information on interoperability aspects and IT infrastructure needs, for example, primary data access, metadata standards, open access licences, data portals, cloud computing facilities and general research infrastructure requirements. We asked participants to put emphasis on providing references and sources to ensure the traceability of the provided information.
As an example for a filled EBV workflow template, we illustrate the workflow information that was gathered for the EBV ‘species abundance of butterflies’ (Table
Example of the information gathered in one of the EBV templates specifying details on workflow components (data collection and sampling, data integration and modelling) and whether they relate to current initiatives, emerging tools and projects or future needs. The bottom of the template was designed to collect additional information on interoperability aspects, IT infrastructure needs and references and sources. The example represents the EBV ‘Species abundance of butterflies'. Note that a separate template was provided for each EBV.
Workflow description for EBV (Species abundance of butterflies) | |||
Current initiatives |
Emerging tools and projects |
Future needs |
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Data collection and sampling Data collection method Sampling design (EU-wide monitoring) Type of raw data Novel monitoring methods Capacity building |
European Butterfly Monitoring Scheme (eBMS) - Weekly transect counts during season National monitoring initiatives - Transect routes or time-area counts in Flanders, South Tyrol, Switzerland |
Citizen-science phone application (eBMS App) - 15-min full counts - 15-min single species counts Other examples - Massive collection of opportunistic observations - Adaptive sampling approaches (e.g. DECIDE) - Abundance monitoring in forest and ecosystem restoration projects (Denmark, France) |
- Increase the number of transects, coordinators and volunteers across Europe - Development of app usability (local adaptations, translation and species guides) - Increase the number of paid experts to monitor sensible areas and species - Field guides and sampling protocols for other EU regions |
Data integration Standardisation and harmonisation Preprocessing Protocols and metadata Way of data aggregation Integration nodes Automated data streams |
National and EU-level integration - EU-wide integration node - Standardised sampling protocols (transect counts), but data entry varies by country - Field guides for different regions in Europe |
Extended data integration - Data inclusion and data harmonisation for new European countries (ABLE project: 'Assessing Butterflies in Europe’) - Extended EU-wide data integration through Butterfly Conservation Europe |
- Integration of transect count data (eBMS) and data from the 15-min counts (eBMS App) - Interfaces between decentralised national databases of butterfly monitoring schemes |
Modelling Types of models Predictors Estimation and uncertainty Software |
Trend estimation - Species flight curves with splines and GAMs - Trend estimation with GAI - Combined site index with a GLM - Bootstrapping - R-package 'rtrim' |
Predictive models - European-wide occupancy models Integrated models - Integrated modelling of species distributions and abundance through combining different data sources (transect counts, 15-minute counts and opportunistic observations) |
- Models to estimate abundance continuously (wall-to-wall) across Europe |
Interoperability aspects (e.g. access to and sharing of primary data, metadata standards, open access licences, APIs, machine readability):
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IT infrastructure needs (e.g. data portals, use of European Research Infrastructures, data storage, central repositories, scalable computing, cloud services):
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References and sources (e.g. name and institution of expert who provided information for this template, literature, online sources, web pages of EU project):
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Before the workshop, preliminary information on workflow components were available for more than half of the 70 EBVs (Fig.
Progress in completing the EBV workflow templates during the EuropaBON virtual workshop on EBV workflows. The graph depicts the amount and completeness of information content (empty, preliminary, sufficient) of EBV templates (n = 70 in total) at three stages: before the workshop, in the middle of the workshop and after the workshop. The red line shows the number of empty EBV templates, the yellow line represents templates with preliminary information and the blue line indicates templates that were sufficiently filled.
To summarise the key future needs, we scored and grouped the content from all EBV workflow templates after the workshop into broader categories for each EBV workflow component (Fig.
Summary of future needs for developing EBV workflows at a European scale. The information was obtained by grouping the content from the EBV workflow templates (n = 70) into the categories of the y-axis, representing the three major EBV workflow components (i.e. data collection and sampling, data integration and modelling).
On day 3 of the workshop, workshop participants were asked to fill out a 5–10 min online survey in which they had to link the 70 EBVs to the importance of a monitoring technique. Depending on their expertise, the participants could choose one out of six monitoring techniques:
We offered a Google form for each monitoring technique (see example in Fig.
Online survey on the importance of monitoring techniques for generating EBVs. (a) Example showing the upper part (first 10 out of 70 EBVs) of the survey on digital sensors (Google form). A separate form was provided for each monitoring technique (structured in-situ monitoring, citizen-science observations, genetics, digital sensors, satellite remote sensing and aerial remote sensing); (b) Example of survey responses (incl. answers "yes", "partially" and "no") specifying the importance of digital sensors for monitoring a specific EBV. Responses for the first 10 (out of 70) EBVs are shown (sample size of answers varies between 6 and 12).
To better understand the overarching needs for implementing each monitoring technique at a European scale, we organised the break-out sessions on day 3 around the question which emerging tools and future needs are relevant for implementing a specific monitoring technique. Each Miro board (i.e. each break-out group) was focused on one of the six monitoring techniques. The structure of the boards (i.e. upper row of coloured boxes in Fig.
Example of a Miro board used for identifying the overarching needs for implementing digital sensors for collecting and sampling data for EBV workflows at a European scale. Participants were asked to specify key requirements for different workflow components (data collection and sampling, data integration and modelling), interoperability aspects and IT infrastructure needs (coloured boxes in upper row). Information in the online sticky notes (coloured squares) was entered by participants and were later grouped into broader thematic topics (yellow circles).
The workshop successfully achieved its five main objectives: engaging a wide and diverse group of experts and stakeholders in the co-design process; obtaining comprehensive descriptions of each EBV workflow component, based on current monitoring initiatives and emerging projects and tools; outlining future needs for each workflow component and EBV; establishing links between monitoring techniques and specific EBVs; and ascertaining the main future needs for implementing each monitoring technique. The participants' contributions helped to gather a large amount of information on EBV workflows.
This workshop built on various efforts within the EuropaBON project and extended them by gathering detailed information on workflow components and examining the links between EBVs and several monitoring techniques. The current version of the EBV list (
A priority now is to analyze the gathered information and to provide detailed workflow descriptions. Additionally, recommendations will be developed for the design and implementation of a European Biodiversity Observation Network, based on the future needs identified during the workshop, including suggestions for a new Biodiversity Monitoring Coordination Centre in Europe. The full implementation of the proposed system will require to expand the current monitoring network, to implement new sampling networks, to support data standardisation and data integration, to develop new modelling tools and to ensure the effective incorporation of new monitoring techniques. These tasks align well with the European Biodiversity Partnership Biodiversa+ (
We would like to express our deepest gratitude to our colleagues within the EuropaBON project who have strongly contributed to the successful organisation of the workshop. Their dedication and hard work have been invaluable in bringing this event to fruition. We also sincerely thank all workshop participants, whose insightful input and willingness to share information allowed the workshop to be a huge success. Their efforts will make a strong contribution to developing EBV workflows and the co-design of the European Biodiversity Observation Network. We also thank Julian Evans for providing code to make Figure 4. We sincerely acknowledge the European Union's Horizon 2020 Research and Innovation Programme (grant agreement No 101003553) for its financial support. The content of this publication does not necessarily reflect the official opinions of the European Commission or other institutions of the European Union.
EuropaBON list of Essential Biodiversity Variables (version 22 of February 2023)
Agenda of EuropaBON virtual workshop on EBV workflows (22–24 February 2023)