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  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">17</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:8E638694-B4E0-570A-856A-746FF325BF6B</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">Research Ideas and Outcomes</journal-title>
        <abbrev-journal-title xml:lang="en">RIO</abbrev-journal-title>
      </journal-title-group>
      <issn pub-type="epub">2367-7163</issn>
      <publisher>
        <publisher-name>Pensoft Publishers</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.3897/rio.2.e9648</article-id>
      <article-id pub-id-type="publisher-id">9648</article-id>
      <article-id pub-id-type="manuscript">5959</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Research Presentation</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>A Scoring System for Identifying Severe Cases of Influenza-like Illness by Comorbidity and Age - A Nationwide Cohort Analysis</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Chen</surname>
            <given-names>Robert Jeenchen</given-names>
          </name>
          <email xlink:type="simple">rjcc@ntu.edu.tw</email>
          <xref ref-type="aff" rid="A1">‡</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Fang</surname>
            <given-names>Cheng-Chung</given-names>
          </name>
          <xref ref-type="aff" rid="A2">§</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Shih</surname>
            <given-names>Fuh-Yuan</given-names>
          </name>
          <xref ref-type="aff" rid="A2">§</xref>
        </contrib>
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>King</surname>
            <given-names>Chwan-Chuen</given-names>
          </name>
          <email xlink:type="simple">chwanchuen@gmail.com</email>
          <xref ref-type="aff" rid="A3">|</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line content-type="verbatim">Cardiovascular Surgery, Taipei Tzuchi Hospital, Tzuchi University, New Taipei City, Taiwan</addr-line>
        <institution>Cardiovascular Surgery, Taipei Tzuchi Hospital, Tzuchi University</institution>
        <addr-line content-type="city">New Taipei City</addr-line>
        <country>Taiwan</country>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line content-type="verbatim">Emergency Medicine, National Taiwan University Hospital, National Taiwan University, Taipei, Taiwan</addr-line>
        <institution>Emergency Medicine, National Taiwan University Hospital, National Taiwan University</institution>
        <addr-line content-type="city">Taipei</addr-line>
        <country>Taiwan</country>
      </aff>
      <aff id="A3">
        <label>3</label>
        <addr-line content-type="verbatim">Graduate Institute of Epidemiology and Preventive Medicine, College of Public Health, National Taiwan University, Taipei, Taiwan</addr-line>
        <institution>Graduate Institute of Epidemiology and Preventive Medicine, College of Public Health, National Taiwan University</institution>
        <addr-line content-type="city">Taipei</addr-line>
        <country>Taiwan</country>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding authors: Robert Jeenchen Chen (<email xlink:type="simple">rjcc@ntu.edu.tw</email>), Chwan-Chuen King (<email xlink:type="simple">chwanchuen@gmail.com</email>).</p>
        </fn>
        <fn fn-type="edited-by">
          <p>Academic editor: </p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2016</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>29</day>
        <month>06</month>
        <year>2016</year>
      </pub-date>
      <volume>2</volume>
      <elocation-id>e9648</elocation-id>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/2DDD138B-AE4B-516C-B5D6-D6D55B943262">2DDD138B-AE4B-516C-B5D6-D6D55B943262</uri>
      <uri content-type="zenodo_dep_id" xlink:href="https://zenodo.org/record/125615">125615</uri>
      <history>
        <date date-type="received">
          <day>22</day>
          <month>06</month>
          <year>2016</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Robert Jeenchen Chen, Cheng-Chung Fang, Fuh-Yuan Shih, Chwan-Chuen King</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0" xlink:type="simple">
          <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <label>Abstract</label>
        <sec sec-type="background">
          <title>Background</title>
          <p>Identification of high-risk severe cases from influenza-like illness (ILI) is crucial for disease surveilance and clinical management. Comorbidity and demography profile may be a good risk estimation. The study utilized Taiwanese National Health Insurance Database, ICD-9, and Marsden-Haug’s ILI Codes to measure the effect of systemic classes of comorbidity on four outcomes: ospitalization cost, length of stay (LOS), death, and intensive care unit (ICU) entry.</p>
        </sec>
        <sec sec-type="new information">
          <title>New information</title>
          <p>From 2008 to 2010, there were 319,775 ILI inpatient cases, of which 8.82% entered ICU and 3.83% died at hospital discharge. The significant comorbidity attributes varied in each age stratum: heart failure in any age, non-dialyzed renal insufficiency in any age, cancer in school-age children up to mid-age adults, tuberculosis in the elderly, stroke in adults, congenital anomaly in children and adolescents, transplant in school-age up to adolescents, or HIV in young adults.</p>
          <p>Comorbidity vector was (heart failure, non-dialyzed renal insufficiency, cancer, tuberculosis, stroke, congenital anomaly, transplant, HIV). Age vector was (1, 1, 6&lt;=age&lt;45, 75&lt;=age, 18&lt;=age&lt;65, 0&lt;age&lt;=18, 6&lt;=age&lt;18, 18&lt;=age&lt;45). Comorbidity score, the dot product of comorbidity vector and age vector, showed significant correlation with hospitalization cost (Spearman rho=0.1885, p&lt;0.0001), and with LOS (Spearman rho=0.1717, p&lt;0.0001). Its ROC area-under-curves (AUC) were 0.7454 with death and 0.6840 with ICU.</p>
          <p>The risk estimation model could facilitate us to address population measures for upcoming severe influenza epidemics, and further allocate resources optimally.</p>
        </sec>
      </abstract>
      <kwd-group>
        <label>Keywords</label>
        <kwd>Influenza-like illness</kwd>
        <kwd>comorbidity</kwd>
        <kwd>ICD-9</kwd>
        <kwd>risk model</kwd>
      </kwd-group>
      <funding-group>
        <funding-statement>None.</funding-statement>
      </funding-group>
      <counts>
        <fig-count count="6"/>
        <table-count count="1"/>
        <ref-count count="1"/>
      </counts>
    </article-meta>
  </front>
  <body>
    <sec sec-type="Introduction">
      <title>Introduction</title>
      <p>Influenza-like illness (ILI) is often the initial presentation of influenza for practicing clinicians. With limited healthcare resources and medical attention, it becomes paramount to identify high-risk ILI cases by their comorbidity attributes for appropriate case management.</p>
    </sec>
    <sec sec-type="Presentation">
      <title>Presentation</title>
      <p>The research was presented in:</p>
      <p><ext-link ext-link-type="uri" xlink:href="http://optionsviii.controlinfluenza.com">Options for the Control of Influenza VIII</ext-link>, Cape Town, South Africa, 5-9 September 2013</p>
      <p>Clinical Management Poster Session (Suppl. materials <xref ref-type="supplementary-material" rid="S3309654">1</xref>, <xref ref-type="supplementary-material" rid="S3318252">4</xref>).</p>
    </sec>
    <sec sec-type="Methods">
      <title>Methods</title>
      <p>Retrieved from the one-million-per-year systematic samples of Taiwanese National Health Insurance Databases from 2008 to 2010, our cohort composed of all inpatient encounters (admissions) with the diagnostic ICD-9 (International Classification of Diseases, Ninth Revision) that matched the ILI definition proposed by Marsden-Haug’s Code-based Syndromic Surveillance (<xref ref-type="bibr" rid="B3309677">Marsden-Haug et al. 2007</xref>) in the defined scenarios. The defined scenarios were: within the same hospitalization, or with a prior ambulatory visit (outpatient clinic or emergency room) one or two days earlier. Comorbidity attributes were defined by appropriate ICD-9 codes that included most chronic diseases in several categories: immune-related, pulmonary, metabolic, cardiovascular, and others. Four outcome measures represented severe ILI cases: hospitalization cost, length of stay (LOS), death, and intensive care unit (ICU) entry. Data management was done with SAS 9.3/SQL (<ext-link ext-link-type="uri" xlink:href="http://www.sas.com">http://www.sas.com</ext-link>) (sample codes Suppl. material <xref ref-type="supplementary-material" rid="S3309655">2</xref>) and statistical analysis was performed with StataMP 13 (<ext-link ext-link-type="uri" xlink:href="http://www.stata.com">http://www.stata.com</ext-link>) (sample codes Suppl. material <xref ref-type="supplementary-material" rid="S3309656">3</xref>).</p>
      <p>Univariate and multivariate analyses were done with the dependent variables as worse outcome, and the comorbidity attributes as covariates with the adjustment for gender in pre-defined age strata. The selected comorbidity attributes formulated Comorbidity vector and the corresponding age strata formulated Age vector. Comorbidity score was defined as the dot product of Comorbidity vector and Age vector. Its performance was assessed by Spearman correlation and by receiver operating characteristic (ROC) curves.</p>
    </sec>
    <sec sec-type="Data resources">
      <title>Data resources</title>
      <p>Data used to produce figures are deposited in the <ext-link ext-link-type="uri" xlink:href="http://nhird.nhri.org.tw/en/">Taiwanese National Healtn Insurance Research Database</ext-link></p>
      <p>Selected raw datasets, SAS/SQL programs, and Stata programs are available on the following weblink:</p>
      <p>
        <ext-link ext-link-type="uri" xlink:href="https://www.dropbox.com/sh/lzm4z3zt3imcpwa/AABrFngHGJ5KLHAIAhtCpE7Ga?dl=0">https://www.dropbox.com/sh/lzm4z3zt3imcpwa/AABrFngHGJ5KLHAIAhtCpE7Ga?dl=0</ext-link>
      </p>
      <p>One of the processed datasets for Stata 14 is published with the present paper as an example (Suppl. material <xref ref-type="supplementary-material" rid="S3331743">5</xref>).</p>
    </sec>
    <sec sec-type="Results and discussion">
      <title>Results and discussion</title>
      <p>From 2009 to 2010, our cohort had 319,775 ILI inpatient cases, of which 8.82% entered ICU and 3.83% died at hospital discharge (Fig. <xref ref-type="fig" rid="F3309695">1</xref>). The significant outcomes-affecting comorbidity attributes varied in each age stratum: congenital anomaly and heart failure in the age from 0 to 5 years; congenital anomaly, cancer, heart failure, non-dialyzed renal insufficiency, and transplant in the age from 6 to 17 years; cancer, diabetes, heart failure, stroke, chronic obstructive pulmonary disease (COPD), liver cirrhosis, non-dialyzed renal insufficiency, and human immunodeficiency virus (HIV) in the age from 18 to 44 years; heart failure, stroke, and non-dialyzed renal insufficiency in the age from 45 to 64 years; heart failure, COPD, and non-dialyzed renal insufficiency in the age from 65 to 74 years; tuberculosis, heart failure, and non-dialyzed renal insufficiency in the age from 75 years and above.</p>
      <p>Comorbidity vector was (heart failure, non-dialyzed renal insufficiency, cancer, tuberculosis, stroke, congenital anomaly, transplant, HIV). Age vector was (1, 1, 6&lt;=age&lt;45, 75&lt;=age, 18&lt;=age&lt;65, 0&lt;age&lt;=18, 6&lt;=age&lt;18, 18&lt;=age&lt;45) (Fig. <xref ref-type="fig" rid="F3309719">2</xref>). Comorbidity score, the dot product of comorbidity vector and age vector, showed significant correlation with hospitalization cost (Spearman rho=0.1885, p&lt;0.0001) (Fig. <xref ref-type="fig" rid="F3309727">3</xref>), and with LOS (Spearman rho=0.1717, p&lt;0.0001) (Fig. <xref ref-type="fig" rid="F3309725">4</xref>). Its ROC area-under-curves (AUC) were 0.7454 with death (Fig. <xref ref-type="fig" rid="F3309721">5</xref>) and 0.6840 with ICU entry (Fig. <xref ref-type="fig" rid="F3309723">6</xref>).</p>
      <p>Higher clinical alertness should be set once an ILI case matches the following age-specific comorbidity attributes: heart failure in any age, non-dialyzed renal insufficiency in any age, cancer in school-age children up to mid-age adults, tuberculosis in the elderly, stroke in adults, congenital anomaly in children and adolescents, transplant in school-age up to adolescents, or HIV in young adults.</p>
      <p>With the ILI severity score calculated, the score-plus-1 effects were significant on all outcomes of the study (Table <xref ref-type="table" rid="T3309730">1</xref>). The ratios or odds ratios of cost, LOS, death, and ICU entry approximated around 1 to 2, showing the trends of worse outcomes with higher ILI severity scores.</p>
    </sec>
    <sec sec-type="Conclusions">
      <title>Conclusions</title>
      <p>The risk estimation model could facilitate us to address population measures for upcoming severe influenza epidemics, and further allocate resources optimally for prevention and control in public health decision-making.</p>
    </sec>
    <sec sec-type="Presented at">
      <title>Presented at</title>
      <p><ext-link ext-link-type="uri" xlink:href="http://optionsviii.controlinfluenza.com">Options for the Control of Influenza VIII</ext-link>, Cape Town, South Africa, 5-9 September 2013. See original poster (Suppl. material <xref ref-type="supplementary-material" rid="S3318252">4</xref>).</p>
    </sec>
  </body>
  <back>
    <ack>
      <title>Acknowledgements</title>
      <p>Special thanks for Ms. Wen-Wen Wang for her administrative supports.</p>
    </ack>
    <ref-list>
      <title>References</title>
      <ref id="B3309677">
        <element-citation publication-type="article">
          <person-group person-group-type="author">
            <name name-style="western">
              <surname>Marsden-Haug</surname>
              <given-names>Nicola</given-names>
            </name>
            <name name-style="western">
              <surname>Foster</surname>
              <given-names>Virginia B</given-names>
            </name>
            <name name-style="western">
              <surname>Gould</surname>
              <given-names>Philip L</given-names>
            </name>
            <name name-style="western">
              <surname>Elbert</surname>
              <given-names>Eugene</given-names>
            </name>
            <name name-style="western">
              <surname>Wang</surname>
              <given-names>Hailiang</given-names>
            </name>
            <name name-style="western">
              <surname>Pavlin</surname>
              <given-names>Julie A</given-names>
            </name>
          </person-group>
          <year>2007</year>
          <article-title>Code-based syndromic surveillance for influenzalike illness by International Classification of Diseases, Ninth Revision.</article-title>
          <source>Emerging infectious diseases</source>
          <volume>13</volume>
          <issue>2</issue>
          <fpage>207</fpage>
          <lpage>216</lpage>
          <comment content-type="language">English</comment>
          <uri>http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&amp;id=17479881&amp;retmode=ref&amp;cmd=prlinks</uri>
          <pub-id pub-id-type="doi">10.3201/eid1302.060557</pub-id>
        </element-citation>
      </ref>
    </ref-list>
  </back>
  <floats-group>
    <fig id="F3309695" position="float" orientation="portrait">
      <label>Figure 1.</label>
      <caption>
        <p>ILI case proportion and outcome distributions.</p>
      </caption>
      <graphic xlink:href="rio-2-e9648-g001.jpg" position="float" id="oo_92067.jpg" orientation="portrait" xlink:type="simple"/>
    </fig>
    <fig id="F3309719" position="float" orientation="portrait">
      <label>Figure 2.</label>
      <caption>
        <p>ILI severity score formula</p>
      </caption>
      <graphic xlink:href="rio-2-e9648-g002.jpg" position="float" id="oo_92068.jpg" orientation="portrait" xlink:type="simple"/>
    </fig>
    <fig id="F3309727" position="float" orientation="portrait">
      <label>Figure 3.</label>
      <caption>
        <p>Cost (US$) and ILI score</p>
      </caption>
      <graphic xlink:href="rio-2-e9648-g003.jpg" position="float" id="oo_92074.jpg" orientation="portrait" xlink:type="simple"/>
    </fig>
    <fig id="F3309725" position="float" orientation="portrait">
      <label>Figure 4.</label>
      <caption>
        <p>LOS and ILI score</p>
      </caption>
      <graphic xlink:href="rio-2-e9648-g004.jpg" position="float" id="oo_92073.jpg" orientation="portrait" xlink:type="simple"/>
    </fig>
    <fig id="F3309721" position="float" orientation="portrait">
      <label>Figure 5.</label>
      <caption>
        <p>ROC curve of ILI score and death</p>
      </caption>
      <graphic xlink:href="rio-2-e9648-g005.jpg" position="float" id="oo_92069.jpg" orientation="portrait" xlink:type="simple"/>
    </fig>
    <fig id="F3309723" position="float" orientation="portrait">
      <label>Figure 6.</label>
      <caption>
        <p>ROC curve of ILI score and ICU entry</p>
      </caption>
      <graphic xlink:href="rio-2-e9648-g006.jpg" position="float" id="oo_92075.jpg" orientation="portrait" xlink:type="simple"/>
    </fig>
    <table-wrap id="T3309730" position="float" orientation="portrait">
      <label>Table 1.</label>
      <caption>
        <p>Effect of ILI score +1 (adjusted for age and sex) on outcomes</p>
      </caption>
      <table rules="all" border="0">
        <tbody>
          <tr>
            <td rowspan="1" colspan="1">
              <bold>Outcomes</bold>
            </td>
            <td rowspan="1" colspan="1">
              <bold>Statistics</bold>
            </td>
            <td rowspan="1" colspan="1">
              <bold>Effect</bold>
            </td>
            <td rowspan="1" colspan="2">
              <bold>95% CI</bold>
            </td>
            <td rowspan="1" colspan="1">
              <bold>p</bold>
            </td>
          </tr>
          <tr>
            <td rowspan="1" colspan="1">Cost</td>
            <td rowspan="1" colspan="1">Ratio</td>
            <td rowspan="1" colspan="1">1.44</td>
            <td rowspan="1" colspan="1">1.42</td>
            <td rowspan="1" colspan="1">1.45</td>
            <td rowspan="1" colspan="1">&lt;0.0001</td>
          </tr>
          <tr>
            <td rowspan="1" colspan="1">LOS</td>
            <td rowspan="1" colspan="1">Ratio</td>
            <td rowspan="1" colspan="1">1.26</td>
            <td rowspan="1" colspan="1">1.25</td>
            <td rowspan="1" colspan="1">1.27</td>
            <td rowspan="1" colspan="1">&lt;0.0001</td>
          </tr>
          <tr>
            <td rowspan="1" colspan="1">Death</td>
            <td rowspan="1" colspan="1">OR</td>
            <td rowspan="1" colspan="1">1.21</td>
            <td rowspan="1" colspan="1">1.19</td>
            <td rowspan="1" colspan="1">1.23</td>
            <td rowspan="1" colspan="1">&lt;0.0001</td>
          </tr>
          <tr>
            <td rowspan="1" colspan="1">ICU</td>
            <td rowspan="1" colspan="1">OR</td>
            <td rowspan="1" colspan="1">1.87</td>
            <td rowspan="1" colspan="1">1.84</td>
            <td rowspan="1" colspan="1">1.91</td>
            <td rowspan="1" colspan="1">&lt;0.0001</td>
          </tr>
          <tr>
            <td rowspan="1" colspan="1">AE</td>
            <td rowspan="1" colspan="1">OR</td>
            <td rowspan="1" colspan="1">1.42</td>
            <td rowspan="1" colspan="1">1.40</td>
            <td rowspan="1" colspan="1">1.44</td>
            <td rowspan="1" colspan="1">&lt;0.0001</td>
          </tr>
        </tbody>
      </table>
    </table-wrap>
    <supplementary-material id="S3309654" orientation="portrait" position="float" xlink:type="simple">
      <label>Supplementary material 1</label>
      <caption>
        <p>Conference Programme Book</p>
      </caption>
      <p>Data type: PDF e-file</p>
      <p>Brief description: Options for the Control of Influenza VIII Conference Programme Book</p>
      <p>File: oo_92048.pdf</p>
      <media xlink:href="rio-2-e9648-s001.pdf" mimetype="Adobe Acrobat Document" mime-subtype="pdf" position="float" orientation="portrait" xlink:type="simple"/>
      <attrib specific-use="authors">Options for the Control of Influenza VIII</attrib>
    </supplementary-material>
    <supplementary-material id="S3309655" orientation="portrait" position="float" xlink:type="simple">
      <label>Supplementary material 2</label>
      <caption>
        <p>A Sample SAS SQL program file</p>
      </caption>
      <p>Data type: SAS codes</p>
      <p>Brief description: A sample SAS SQL program code fragment is attached.</p>
      <p>The more complete version is available upon request.</p>
      <p>File: oo_92049.sas</p>
      <media xlink:href="rio-2-e9648-s002.sas" mimetype="sas file" mime-subtype="sas" position="float" orientation="portrait" xlink:type="simple"/>
      <attrib specific-use="authors">Robert Jeenchen Chen</attrib>
    </supplementary-material>
    <supplementary-material id="S3309656" orientation="portrait" position="float" xlink:type="simple">
      <label>Supplementary material 3</label>
      <caption>
        <p>A sample Stata program file</p>
      </caption>
      <p>Data type: Stata program codes</p>
      <p>Brief description: A sample Stata program code fragment is attached.</p>
      <p>The more complete version is available upon request.</p>
      <p>File: oo_92050.do</p>
      <media xlink:href="rio-2-e9648-s003.do" mimetype="do file" mime-subtype="do" position="float" orientation="portrait" xlink:type="simple"/>
      <attrib specific-use="authors">Robert Jeenchen Chen</attrib>
    </supplementary-material>
    <supplementary-material id="S3318252" orientation="portrait" position="float" xlink:type="simple">
      <label>Supplementary material 4</label>
      <caption>
        <p>Original poster file</p>
      </caption>
      <p>Data type: Presentation PDF</p>
      <p>Brief description: The poster presented in the Conference.</p>
      <p>File: oo_92819.pdf</p>
      <media xlink:href="rio-2-e9648-s004.pdf" mimetype="Adobe Acrobat Document" mime-subtype="pdf" position="float" orientation="portrait" xlink:type="simple"/>
      <attrib specific-use="authors">Chen RJ, King CC</attrib>
    </supplementary-material>
    <supplementary-material id="S3331743" orientation="portrait" position="float" xlink:type="simple">
      <label>Supplementary material 5</label>
      <caption>
        <p>One part of the datasets used in the analyses</p>
      </caption>
      <p>Data type: Dataset</p>
      <p>Brief description: The dataset used for in Stata 14 format. The other datasets are available upon request.</p>
      <p>File: oo_92976.dta</p>
      <media xlink:href="rio-2-e9648-s005.dta" mimetype="dta file" mime-subtype="dta" position="float" orientation="portrait" xlink:type="simple"/>
      <attrib specific-use="authors">Chen RJ</attrib>
    </supplementary-material>
  </floats-group>
</article>
