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  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">17</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:8E638694-B4E0-570A-856A-746FF325BF6B</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">Research Ideas and Outcomes</journal-title>
        <abbrev-journal-title xml:lang="en">RIO</abbrev-journal-title>
      </journal-title-group>
      <issn pub-type="epub">2367-7163</issn>
      <publisher>
        <publisher-name>Pensoft Publishers</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.3897/rio.8.e94386</article-id>
      <article-id pub-id-type="publisher-id">94386</article-id>
      <article-id pub-id-type="manuscript">20386</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Conference Abstract</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Towards FAIR Data Access</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Broeder</surname>
            <given-names>Daan</given-names>
          </name>
          <email xlink:type="simple">daan.broeder@gmail.com</email>
          <uri content-type="orcid">https://orcid.org/0000-0002-8446-3410</uri>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Elbers</surname>
            <given-names>Willem</given-names>
          </name>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Gawor</surname>
            <given-names>Michal</given-names>
          </name>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Concordia</surname>
            <given-names>Cesare</given-names>
          </name>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Larrousse</surname>
            <given-names>Nicolas</given-names>
          </name>
          <xref ref-type="aff" rid="A3">3</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Van Uytvanck</surname>
            <given-names>Dieter</given-names>
          </name>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line content-type="verbatim">CLARIN ERIC, Utrecht, Netherlands</addr-line>
        <institution>CLARIN ERIC</institution>
        <addr-line content-type="city">Utrecht</addr-line>
        <country>Netherlands</country>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line content-type="verbatim">CNR-ISTI - Institute of Information Science and Technologies "Alessandro Faedo" , National Research Council of Italy, Pisa, Italy</addr-line>
        <institution>CNR-ISTI - Institute of Information Science and Technologies "Alessandro Faedo" , National Research Council of Italy</institution>
        <addr-line content-type="city">Pisa</addr-line>
        <country>Italy</country>
      </aff>
      <aff id="A3">
        <label>3</label>
        <addr-line content-type="verbatim">Huma-Num, Paris, France</addr-line>
        <institution>Huma-Num</institution>
        <addr-line content-type="city">Paris</addr-line>
        <country>France</country>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding author: Daan Broeder (<email xlink:type="simple">daan.broeder@gmail.com</email>).</p>
        </fn>
        <fn fn-type="edited-by">
          <p>Academic editor: </p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2022</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>12</day>
        <month>10</month>
        <year>2022</year>
      </pub-date>
      <volume>8</volume>
      <elocation-id>e94386</elocation-id>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/35A6EEB5-1B64-50D1-98AC-BA93CD883BDA">35A6EEB5-1B64-50D1-98AC-BA93CD883BDA</uri>
      <uri content-type="zenodo_dep_id" xlink:href="https://zenodo.org/record/7227304">7227304</uri>
      <permissions>
        <copyright-statement>Daan Broeder, Willem Elbers, Michal Gawor, Cesare Concordia, Nicolas Larrousse, Dieter Van Uytvanck</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">
          <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <label>Abstract</label>
        <p>
          <bold>Background </bold>
        </p>
        <p>In the past decade many different national, EU and global projects have been successful in raising awareness about Open Science and the importance of making data findable and accessible such as stated in the FAIR principles (<xref ref-type="bibr" rid="B8001507">Wilkinson et al. 2016</xref>).</p>
        <p>In this respect, there have been many advances with respect to options for discovering data. A multitude of either thematic or general catalogues are providing faceted browsing interfaces for humans and Application Programming Interfaces (APIs) for use by machines and similarly, data-citations in publications offer references to resources hosted by repositories. However, using such catalogues and data-citations, researchers are not guaranteed to obtain access to the data itself. Mostly the resource link in the catalogue (and also in the metadata) or citation is a “landing-page”, a description of the resource meant for human consumption. The landing-page may contain instructions how to access or download the resource itself but usually it is difficult to parse by machines.</p>
        <p>
          <bold>FAIR data access</bold>
        </p>
        <p>Thus the approach sketched above does not meet the requirements in scenarios where applications need assured and quick access to data. Also the FAIR principles interpretation from GO FAIR states*<xref ref-type="fn" rid="FN8006919">1</xref> that these “emphasise machine-actionability (i.e., the capacity of computational systems to find, access, interoperate, and reuse data with none or minimal human intervention) because humans increasingly rely on computational support to deal with data as a result of the increase in volume, complexity, and creation speed of data.” The requirement for providing a Persistent Identifier (PID) for a resource*<xref ref-type="fn" rid="FN8005561">2</xref>, is mostly interpreted as meaning a PID for the resource’s metadata or landing-page only. </p>
        <p>Note that we ignore the need for user authentication and authorization prior to accessing data, here we will only consider data that is ‘freely’ accessible.</p>
        <p>To improve the situation with respect to machine data accessibility a number of technologies and approaches that have been discussed in the <ext-link ext-link-type="uri" xlink:href="http://clarin.eu">CLARIN</ext-link> and Social Sciences and Humanities (SSH) infrastructure domain can be useful. We present some and comment on their suitability.</p>
        <p>
          <bold>Signposting</bold>
        </p>
        <p>Signposting*<xref ref-type="fn" rid="FN8005562">3</xref> is a technology proposed by van de Sompel (<xref ref-type="bibr" rid="B8001565">Sompel and Nelson 2015</xref>) to release relevant technical and bibliographical attributes from a resource URI. It's well described, and uses the HTTP protocol to provide additional information via HTTP Link Headers*<xref ref-type="fn" rid="FN8005592">4</xref>.  Alternatively, for HTML type resources, the information may also be provided in HTML Link elements. </p>
        <p>In the CLARIN community the signposting concept was accepted, but its proposed implementation deviated from van de Sompel and made it less dependent on the HTTP protocol  <underline>(</underline><xref ref-type="bibr" rid="B8005595">Arnold et al. 2021</xref>). However on the downside, the signposting information is embedded in the CLARIN specific Component Metadata  (CMDI) (<xref ref-type="bibr" rid="B8001614">Broeder et al. 2012</xref>), and so makes it CLARIN specific, or at least requires clients to have specific knowledge about CMDI.</p>
        <p>
          <bold>CLARIN Digital Object Gateway (DOG)</bold>
        </p>
        <p>
          <styled-content style="text-align: start;">One approach that is currently worked on for the CLARIN research infrastructure is the creation of a DOG library*<xref ref-type="fn" rid="FN8005605">5</xref> and (later) a service that provides a proxy gateway from the resource PID to the actual data. DOG uses implicit knowledge about the different repository solutions that are used by the CLARIN B-type centres*<xref ref-type="fn" rid="FN8005622">6</xref> and some repositories outside the CLARIN infrastructure. </styled-content>
        </p>
        <p><styled-content style="text-align: start;">DOG works in two steps: first obtaining metadata from the resource PID and secondly extracting resource links from the metadata. </styled-content> <styled-content style="text-align: start;">Each of the repositories registered within DOG has a minimal configuration specifying how to parse fields of interest from the resource's metadata. For B-type CLARIN centres DOG uses content negotiation as the primary way of obtaining the metadata in CMDI format. For repositories outside the CLARIN infrastructure, DOG primarily relies on the API provided by the repository in order to access metadata and data resources. </styled-content></p>
        <p>
          <styled-content style="text-align: start;">The DOG solution does have scalability problems, but within the limited domain of CLARIN centres, it can offer a solution until a better one becomes available.</styled-content>
        </p>
        <p>
          <bold>Limited PID kernel information</bold>
        </p>
        <p>
          <styled-content style="text-align: start;">The (limited) PID kernel information approach assumes that for every Digital Object (DO) (<xref ref-type="bibr" rid="B8120741">Berg-Cross et al. 2015</xref>) and its metadata a Handle type PID  (<xref ref-type="bibr" rid="B8001583">CNRI 2020</xref>) is issued and that the Handle information record can be used to store and associate additional important information with the (meta) data PID using handle value types such as for example a checksum and references to the data or metadata. This is a simplification of the architecture proposed in the work done in RDA context: PID Kernel Info recommendations (<xref ref-type="bibr" rid="B8005608">Weigel et al. 2018</xref>). Consistent use of Handle information records could solve the data access problem, but just as for the signposting strategy, it requires strong discipline to maintain the additional information source. Examples from smaller projects and repositories exist that do manage this information in the Handle record eg. the   DARIAH-DE repository*<xref ref-type="fn" rid="FN8005606">7</xref>. </styled-content>
        </p>
        <p>
          <bold>FAIR Digital Objects (FDO)</bold>
        </p>
        <p>
          <styled-content style="text-align: start;">FDOs*<xref ref-type="fn" rid="FN8005623">8</xref> attempt to overcome the data management challenges posed by the heterogeneity and complexity of data using a combination of abstraction, virtualization and encapsulation (<xref ref-type="bibr" rid="B8001574">Schwardmann 2020</xref>). In practice, in the context of  our access to data problem, the FDO solution can be seen as both a generalization and upgrade of the PID kernel information approach. The key characteristics here are the (conceptual) encapsulation of data objects with data structure and services that allow aware applications to recognize the data objects metadata and bitstream format, and process as intended by the programmer. Eligible data processing services, either general ones from communities, can be found through the FDO typing mechanism, or can be directly linked from the FDO.</styled-content>
        </p>
        <p>
          <styled-content style="text-align: start;">A rich set of FDO attributes permit signaling machines processing FDOs where and how to access bitstream data including for instance additional information about supported protocols and APIs.</styled-content>
        </p>
        <p>
          <bold>What to do?</bold>
        </p>
        <p>
          <styled-content style="text-align: start;">For our community and in our collaboration with others, we need solutions now but would prefer not to invest and get closed in unscalable technologies.</styled-content>
        </p>
        <p><styled-content style="text-align: start;">We would propose to combine the DOG approach with signposting.  First testing URIs (obtained by resolving the Handle PID) for the presence of HTTP Link Headers. If these are missing, (extended) DOG could use its idiosyncratic workflow.</styled-content> <styled-content style="text-align: start;"> Long term we see advantages of the general, scalable and protocol independent approach that FDOs offer. Hybrid solutions are conceivable where FDO proxies can sit between the FDO machinery and data hosted by signposting compliant repositories.</styled-content></p>
      </abstract>
      <kwd-group>
        <label>Keywords</label>
        <kwd>data management</kwd>
        <kwd>metadata</kwd>
        <kwd>CLARIN</kwd>
        <kwd>PIDs</kwd>
        <kwd>repositories</kwd>
        <kwd>Signposting</kwd>
        <kwd>Fair Digital Objects</kwd>
      </kwd-group>
      <counts>
        <fig-count count="0"/>
        <table-count count="0"/>
        <ref-count count="8"/>
      </counts>
    </article-meta>
    <notes>
      <sec sec-type="Presenting author">
        <title>Presenting author</title>
        <p>Daan Broeder</p>
      </sec>
      <sec sec-type="Presented at">
        <title>Presented at</title>
        <p>1st International Conference on FAIR Digital Objects, presentation</p>
      </sec>
    </notes>
  </front>
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        <label>*4</label>
        <p>RFC5988, accessed on: 2022-7-6 doi:10.17487/RFC5988</p>
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  </back>
</article>
