Open Neuroimaging Laboratory

Katja Heuer; Satrajit Ghosh; Amy Robinson Sterling; Roberto Toro

doi:10.3897/rio.2.e9113

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Research Ideas and Outcomes 2: e9113
https://doi.org/10.3897/rio.2.e9113 (08 May 2016)

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Jordi Huguet, Carles Falcon, David Fusté, Sergi Girona, David Vicente, José Luis Molinuevo, Juan Domingo Gispert, Grégory Operto (2021)
Management and Quality Control of Large Neuroimaging Datasets: Developments From the Barcelonaβeta Brain Research Center. Frontiers in Neuroscience 15: .

DOI: 10.3389/fnins.2021.633438

Céline Delettre, Arnaud Messé, Leigh-Anne Dell, Ophélie Foubet, Katja Heuer, Benoit Larrat, Sebastien Meriaux, Jean-Francois Mangin, Isabel Reillo, Camino de Juan Romero, Victor Borrell, Roberto Toro, Claus C. Hilgetag (2019)
Comparison between diffusion MRI tractography and histological tract-tracing of cortico-cortical structural connectivity in the ferret brain. Network Neuroscience 3: 1038.

DOI: 10.1162/netn_a_00098

Katja Heuer, Omer Faruk Gulban, Pierre-Louis Bazin, Anastasia Osoianu, Romain Valabregue, Mathieu Santin, Marc Herbin, Roberto Toro (2019)
Evolution of neocortical folding: A phylogenetic comparative analysis of MRI from 34 primate species. Cortex 118: 275.

DOI: 10.1016/j.cortex.2019.04.011

Anisha Keshavan, Jason D. Yeatman, Ariel Rokem (2019)
Combining Citizen Science and Deep Learning to Amplify Expertise in Neuroimaging. Frontiers in Neuroinformatics 13: .

DOI: 10.3389/fninf.2019.00029

Ignacio Osorio, Miguel Guevara, Danilo Bonometti, Diego Carrasco, Maxime Descoteaux, Cyril Poupon, Jean-François Mangin, Cecilia Hernández, Pamela Guevara (2021)
ABrainVis: an android brain image visualization tool. BioMedical Engineering OnLine 20: .

DOI: 10.1186/s12938-021-00909-0

Sook-Lei Liew, Julia M. Anglin, Nick W. Banks, Matt Sondag, Kaori L. Ito, Hosung Kim, Jennifer Chan, Joyce Ito, Connie Jung, Nima Khoshab, Stephanie Lefebvre, William Nakamura, David Saldana, Allie Schmiesing, Cathy Tran, Danny Vo, Tyler Ard, Panthea Heydari, Bokkyu Kim, Lisa Aziz-Zadeh, Steven C. Cramer, Jingchun Liu, Surjo Soekadar, Jan-Egil Nordvik, Lars T. Westlye, Junping Wang, Carolee Winstein, Chunshui Yu, Lei Ai, Bonhwang Koo, R. Cameron Craddock, Michael Milham, Matthew Lakich, Amy Pienta, Alison Stroud (2018)
A large, open source dataset of stroke anatomical brain images and manual lesion segmentations. Scientific Data 5: .

DOI: 10.1038/sdata.2018.11

Alexandra A. de Sousa, Amélie Beaudet, Tanya Calvey, Ameline Bardo, Julien Benoit, Christine J. Charvet, Colette Dehay, Aida Gómez-Robles, Philipp Gunz, Katja Heuer, Martijn P. van den Heuvel, Shawn Hurst, Pascaline Lauters, Denné Reed, Mathilde Salagnon, Chet C. Sherwood, Felix Ströckens, Mirriam Tawane, Orlin S. Todorov, Roberto Toro, Yongbin Wei (2023)
From fossils to mind. Communications Biology 6: .

DOI: 10.1038/s42003-023-04803-4

Rémi Gau, Stephanie Noble, Katja Heuer, Katherine L. Bottenhorn, Isil P. Bilgin, Yu-Fang Yang, Julia M. Huntenburg, Johanna M.M. Bayer, Richard A.I. Bethlehem, Shawn A. Rhoads, Christoph Vogelbacher, Valentina Borghesani, Elizabeth Levitis, Hao-Ting Wang, Sofie Van Den Bossche, Xenia Kobeleva, Jon Haitz Legarreta, Samuel Guay, Selim Melvin Atay, Gael P. Varoquaux, Dorien C. Huijser, Malin S. Sandström, Peer Herholz, Samuel A. Nastase, AmanPreet Badhwar, Guillaume Dumas, Simon Schwab, Stefano Moia, Michael Dayan, Yasmine Bassil, Paula P. Brooks, Matteo Mancini, James M. Shine, David O’Connor, Xihe Xie, Davide Poggiali, Patrick Friedrich, Anibal S. Heinsfeld, Lydia Riedl, Roberto Toro, César Caballero-Gaudes, Anders Eklund, Kelly G. Garner, Christopher R. Nolan, Damion V. Demeter, Fernando A. Barrios, Junaid S. Merchant, Elizabeth A. McDevitt, Robert Oostenveld, R. Cameron Craddock, Ariel Rokem, Andrew Doyle, Satrajit S. Ghosh, Aki Nikolaidis, Olivia W. Stanley, Eneko Uruñuela, Nasim Anousheh, Aurina Arnatkeviciute, Guillaume Auzias, Dipankar Bachar, Elise Bannier, Ruggero Basanisi, Arshitha Basavaraj, Marco Bedini, Pierre Bellec, R. Austin Benn, Kathryn Berluti, Steffen Bollmann, Saskia Bollmann, Claire Bradley, Jesse Brown, Augusto Buchweitz, Patrick Callahan, Micaela Y. Chan, Bramsh Q. Chandio, Theresa Cheng, Sidhant Chopra, Ai Wern Chung, Thomas G. Close, Etienne Combrisson, Giorgia Cona, R. Todd Constable, Claire Cury, Kamalaker Dadi, Pablo F. Damasceno, Samir Das, Fabrizio De Vico Fallani, Krista DeStasio, Erin W. Dickie, Lena Dorfschmidt, Eugene P. Duff, Elizabeth DuPre, Sarah Dziura, Nathalia B. Esper, Oscar Esteban, Shreyas Fadnavis, Guillaume Flandin, Jessica E. Flannery, John Flournoy, Stephanie J. Forkel, Alexandre R. Franco, Saampras Ganesan, Siyuan Gao, José C. García Alanis, Eleftherios Garyfallidis, Tristan Glatard, Enrico Glerean, Javier Gonzalez-Castillo, Cassandra D. Gould van Praag, Abigail S. Greene, Geetika Gupta, Catherine Alice Hahn, Yaroslav O. Halchenko, Daniel Handwerker, Thomas S. Hartmann, Valérie Hayot-Sasson, Stephan Heunis, Felix Hoffstaedter, Daniela M. Hohmann, Corey Horien, Horea-Ioan Ioanas, Alexandru Iordan, Chao Jiang, Michael Joseph, Jason Kai, Agah Karakuzu, David N. Kennedy, Anisha Keshavan, Ali R. Khan, Gregory Kiar, P. Christiaan Klink, Vincent Koppelmans, Serge Koudoro, Angela R. Laird, Georg Langs, Marissa Laws, Roxane Licandro, Sook-Lei Liew, Tomislav Lipic, Krisanne Litinas, Daniel J. Lurie, Désirée Lussier, Christopher R. Madan, Lea-Theresa Mais, Sina Mansour L, J.P. Manzano-Patron, Dimitra Maoutsa, Matheus Marcon, Daniel S. Margulies, Giorgio Marinato, Daniele Marinazzo, Christopher J. Markiewicz, Camille Maumet, Felipe Meneguzzi, David Meunier, Michael P. Milham, Kathryn L. Mills, Davide Momi, Clara A. Moreau, Aysha Motala, Iska Moxon-Emre, Thomas E. Nichols, Dylan M. Nielson, Gustav Nilsonne, Lisa Novello, Caroline O’Brien, Emily Olafson, Lindsay D. Oliver, John A. Onofrey, Edwina R. Orchard, Kendra Oudyk, Patrick J. Park, Mahboobeh Parsapoor, Lorenzo Pasquini, Scott Peltier, Cyril R. Pernet, Rudolph Pienaar, Pedro Pinheiro-Chagas, Jean-Baptiste Poline, Anqi Qiu, Tiago Quendera, Laura C. Rice, Joscelin Rocha-Hidalgo, Saige Rutherford, Mathias Scharinger, Dustin Scheinost, Deena Shariq, Thomas B. Shaw, Viviana Siless, Molly Simmonite, Nikoloz Sirmpilatze, Hayli Spence, Julia Sprenger, Andrija Stajduhar, Martin Szinte, Sylvain Takerkart, Angela Tam, Link Tejavibulya, Michel Thiebaut de Schotten, Ina Thome, Laura Tomaz da Silva, Nicolas Traut, Lucina Q. Uddin, Antonino Vallesi, John W. VanMeter, Nandita Vijayakumar, Matteo Visconti di Oleggio Castello, Jakub Vohryzek, Jakša Vukojević, Kirstie Jane Whitaker, Lucy Whitmore, Steve Wideman, Suzanne T. Witt, Hua Xie, Ting Xu, Chao-Gan Yan, Fang-Cheng Yeh, B.T. Thomas Yeo, Xi-Nian Zuo (2021)
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron 109: 1769.

DOI: 10.1016/j.neuron.2021.04.001

Anisha Keshavan, Jean-Baptiste Poline (2019)
From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research. Frontiers in Neuroinformatics 13: .

DOI: 10.3389/fninf.2019.00003

Katja Heuer, Nicolas Traut, Roberto Toro (2024)
Thresholdmann: A Web tool for interactively creating adaptive thresholds to segment MRI data.. Journal of Open Source Software 9: 6336.

DOI: 10.21105/joss.06336

Christopher R. Madan (2017)
Advances in Studying Brain Morphology: The Benefits of Open-Access Data. Frontiers in Human Neuroscience 11: .

DOI: 10.3389/fnhum.2017.00405

Neville Magielse, Roberto Toro, Vanessa Steigauf, Mahta Abbaspour, Simon B. Eickhoff, Katja Heuer, Sofie L. Valk (2023)
Phylogenetic comparative analysis of the cerebello-cerebral system in 34 species highlights primate-general expansion of cerebellar crura I-II. Communications Biology 6: .

DOI: 10.1038/s42003-023-05553-z

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