Enabling Open Science: Wikidata for Research (Wiki4R)

Daniel Mietchen; Gregor Hagedorn; Egon Willighagen; Mariano Rico; Asunción Gómez-Pérez; Eduard Aibar; Karima Rafes; Cécile Germain; Alastair Dunning; Lydia Pintscher; Daniel Kinzler

doi:10.3897/rio.1.e7573

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Research Ideas and Outcomes 1: e7573
https://doi.org/10.3897/rio.1.e7573 (22 Dec 2015)

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Daniele Metilli, Valentina Bartalesi, Carlo Meghini (2019)
A Wikidata-based tool for building and visualising narratives. International Journal on Digital Libraries 20: 417.

DOI: 10.1007/s00799-019-00266-3

Nikolaos N. P. Partarakis, Paraskevi P. D. Doulgeraki, Effie E. K. Karuzaki, Ilia I. A. Adami, Stavroula S. N. Ntoa, Daniele D. M. Metilli, Valentina V. B. Bartalesi, Carlo C. M. Meghini, Yannis Y. M. Marketakis, Danai D. M. Kaplanidi, Maria M. T. Theodoridou, Xenophon X. Z. Zabulis (2022)
Representation of Socio-historical Context to Support the Authoring and Presentation of Multimodal Narratives: The Mingei Online Platform. Journal on Computing and Cultural Heritage 15: 1.

DOI: 10.1145/3465556

Viktor Senderov, Lyubomir Penev (2016)
The Open Biodiversity Knowledge Management System in Scholarly Publishing. Research Ideas and Outcomes 2: e7757.

DOI: 10.3897/rio.2.e7757

Houcemeddine Turki, Dariusz Jemielniak, Mohamed A. Hadj Taieb, Jose E. Labra Gayo, Mohamed Ben Aouicha, Mus’ab Banat, Thomas Shafee, Eric Prud’hommeaux, Tiago Lubiana, Diptanshu Das, Daniel Mietchen (2022)
Using logical constraints to validate statistical information about disease outbreaks in collaborative knowledge graphs: the case of COVID-19 epidemiology in Wikidata. PeerJ Computer Science 8: e1085.

DOI: 10.7717/peerj-cs.1085

Samuel Lampa, Egon Willighagen, Pekka Kohonen, Ali King, Denny Vrandečić, Roland Grafström, Ola Spjuth (2017)
RDFIO: extending Semantic MediaWiki for interoperable biomedical data management. Journal of Biomedical Semantics 8: .

DOI: 10.1186/s13326-017-0136-y

Shani Evenstein Sigalov, Rafi Nachmias (2023)
Investigating the potential of the semantic web for education: Exploring Wikidata as a learning platform. Education and Information Technologies 28: 12565.

DOI: 10.1007/s10639-023-11664-1

Daniel Mietchen, Lyubomir Penev, Teodor Georgiev, Boriana Ovcharova, Iva Kostadinova (2021)
Open science in practice: 300 published research ideas and outcomes illustrate how RIO Journal facilitates engagement with the research process. Research Ideas and Outcomes 7: .

DOI: 10.3897/rio.7.e68595

Mikel Zubimendi, Jorge Julian Cueto, Marien Béguelin, Fernando M. Archuby (2024)
Excavando Wikipedia. Revista del Museo de Antropología : 189.

DOI: 10.31048/1852.4826.v17.n1.43539

Marvin Martens, Tim Verbruggen, Penny Nymark, Roland Grafström, Lyle D. Burgoon, Hristo Aladjov, Fernando Torres Andón, Chris T. Evelo, Egon L. Willighagen (2018)
Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials. Frontiers in Genetics 9: .

DOI: 10.3389/fgene.2018.00661

Houcemeddine Turki, Mohamed Ali Hadj Taieb, Thomas Shafee, Tiago Lubiana, Dariusz Jemielniak, Mohamed Ben Aouicha, Jose Emilio Labra Gayo, Eric A. Youngstrom, Mus’ab Banat, Diptanshu Das, Daniel Mietchen, on behalf of WikiProject COVID- on behalf of WikiProject COVID-, Armin Haller (2022)
Representing COVID-19 information in collaborative knowledge graphs: The case of Wikidata. Semantic Web 13: 233.

DOI: 10.3233/SW-210444

Maayan Zhitomirsky-Geffet, Sara Minster (2023)
Cultural information bubbles: A new approach for automatic ethical evaluation of digital artwork collections based on Wikidata. Digital Scholarship in the Humanities 38: 891.

DOI: 10.1093/llc/fqac076

Ryan A. Miller, Friederike Ehrhart, Lars M. T. Eijssen, Denise N. Slenter, Leopold M. G. Curfs, Chris T. Evelo, Egon L. Willighagen, Martina Kutmon (2019)
Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome. Frontiers in Genetics 10: .

DOI: 10.3389/fgene.2019.00059

Denise N Slenter, Martina Kutmon, Kristina Hanspers, Anders Riutta, Jacob Windsor, Nuno Nunes, Jonathan Mélius, Elisa Cirillo, Susan L Coort, Daniela Digles, Friederike Ehrhart, Pieter Giesbertz, Marianthi Kalafati, Marvin Martens, Ryan Miller, Kozo Nishida, Linda Rieswijk, Andra Waagmeester, Lars M T Eijssen, Chris T Evelo, Alexander R Pico, Egon L Willighagen (2018)
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. Nucleic Acids Research 46: D661.

DOI: 10.1093/nar/gkx1064

Tobias Kuhn, Juan M. Banda, Egon Willighagen, Friederike Ehrhart, Chris Evelo, Tareq B. Malas, Michel Dumontier, Albert Merono-Penuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno Ortiz, Laura I. Furlong, Nuria Queralt-Rosinach, Christine Chichester (2018)
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. 2018 IEEE 14th International Conference on e-Science (e-Science) : 83.

DOI: 10.1109/eScience.2018.00024

Giulia Taurino (2022)
The Palgrave Handbook of Digital and Public Humanities. Chapter 4: 49.

DOI: 10.1007/978-3-031-11886-9_4

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