Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections

David Owen; Quentin Groom; Alex Hardisty; Thijs Leegwater; Laurence Livermore; Myriam van Walsum; Noortje Wijkamp; Irena Spasić

doi:10.3897/rio.6.e58030

Related articles by

Project Report

Research Ideas and Outcomes 6: e58030
https://doi.org/10.3897/rio.6.e58030 (28 Aug 2020)

Reviewed

Other versions:

- see version 1

(Verbatim name)

(Catalog Number)

DES

Invalid DOI was provided, please try again

(7)

(0)

Atsuko Takano, Theodor C. H. Cole, Hajime Konagai (2024)
A novel automated label data extraction and data base generation system from herbarium specimen images using OCR and NER. Scientific Reports 14: .

DOI: 10.1038/s41598-023-50179-0

Zhengyu Zhao, Yuanyuan Lu, Yijie Tong, Xin Chen, Ming Bai (2023)
PENet: A phenotype encoding network for automatic extraction and representation of morphological discriminative features. Methods in Ecology and Evolution 14: 3035.

DOI: 10.1111/2041-210X.14235

Maxwell J. Farrell, Liam Brierley, Anna Willoughby, Andrew Yates, Nicole Mideo (2022)
Past and future uses of text mining in ecology and evolution. Proceedings of the Royal Society B: Biological Sciences 289: .

DOI: 10.1098/rspb.2021.2721

Savvas Paragkamian, Georgia Sarafidou, Dimitra Mavraki, Christina Pavloudi, Joana Beja, Menashè Eliezer, Marina Lipizer, Laura Boicenco, Leen Vandepitte, Ruben Perez-Perez, Haris Zafeiropoulos, Christos Arvanitidis, Evangelos Pafilis, Vasilis Gerovasileiou (2022)
Automating the Curation Process of Historical Literature on Marine Biodiversity Using Text Mining: The DECO Workflow. Frontiers in Marine Science 9: .

DOI: 10.3389/fmars.2022.940844

Sandra MacFadyen, Nicky Allsopp, Res Altwegg, Sally Archibald, Judith Botha, Karen Bradshaw, Jane Carruthers, Helen De Klerk, Alta de Vos, Greg Distiller, Stefan Foord, Stefanie Freitag-Ronaldson, Richard Gibbs, Michelle Hamer, Pietro Landi, Duncan MacFadyen, Jeffrey Manuel, Guy Midgley, Glenn Moncrieff, Zahn Munch, Onisimo Mutanga, Sershen Sershen, Rendani Nenguda, Mzabalazo Ngwenya, Daniel Parker, Mike Peel, John Power, Joachim Pretorius, Syd Ramdhani, Mark Robertson, Ian Rushworth, Andrew Skowno, Jasper Slingsby, Andrew Turner, Vernon Visser, Gerhard Van Wageningen, Cang Hui (2022)
Drowning in data, thirsty for information and starved for understanding: A biodiversity information hub for cooperative environmental monitoring in South Africa. Biological Conservation 274: 109736.

DOI: 10.1016/j.biocon.2022.109736

Burhan Rashid Hussein, Owais Ahmed Malik, Wee-Hong Ong, Johan Willem Frederik Slik (2022)
Applications of computer vision and machine learning techniques for digitized herbarium specimens: A systematic literature review. Ecological Informatics 69: 101641.

DOI: 10.1016/j.ecoinf.2022.101641

Alex Hardisty, Paul Brack, Carole Goble, Laurence Livermore, Ben Scott, Quentin Groom, Stuart Owen, Stian Soiland-Reyes (2022)
The Specimen Data Refinery: A Canonical Workflow Framework and FAIR Digital Object Approach to Speeding up Digital Mobilisation of Natural History Collections. Data Intelligence 4: 320.

DOI: 10.1162/dint_a_00134

Subscribe to email alerts for current Article's categories