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Project Report
Research Ideas and Outcomes 10: e114366
https://doi.org/10.3897/rio.10.e114366 (10 Jan 2024)
https://doi.org/10.3897/rio.10.e114366 (10 Jan 2024)
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Article metadata
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1 Acronyms
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2 Executive Summary
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3 A jungle of juristic requirements attached to biodiversity specimens
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3.1 Using biodiversity objects and data for science and societal applications
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3.2 Landscape overview: institutional to global infrastructures
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3.2.1 Institutional Collection Management Systems
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3.2.2 An upcoming European research infrastructure: DiSSCo
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3.2.3 GGBN and other international infrastructures
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4 Methodological approach
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4.1 Starting point: GGBN data standard v1 & SPNHC permitting webpage
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4.2 Not covered: human tissue & pathogens, GMO, IPR, high granularity
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4.3 Creating Document Categories & Document Types, describing Terms
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4.4 Questionnaire on using molecular biological collections
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4.5 Joint MOBILISE-SYNTHESYS+ workshop to explore a cross-community approach
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5 Community needs and use cases
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5.1 Using molecular biological collections: Survey results
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5.2 Use cases in the wider community of natural science collections
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5.2.1 Framework for use cases from biological collections
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5.2.2 Framework for use cases from the Earth Sciences
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5.2.3 Framework for use cases from anthropology
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5.3 Synthesis of use cases
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5.3.1 Accessioning and in-house documentation
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5.3.2 Loans and exchange
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5.3.3 Use
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5.3.4 Publication and submission to public repositories, databases and infrastructures
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5.4 Needs for implementation and infrastructure development
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6 The Biodiversity Permit/Contract Typology
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6.1 A two-tiered system of Document Categories and Document Types for permits and contracts
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6.2 A set of 7 Document Categories
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6.2.1 Access and Benefit-Sharing Document (ABS)
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6.2.2 High level arrangements
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6.2.3 Permits for collecting & related/taking/possessing
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6.2.4 Permits for special purposes (excluding ABS)
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6.2.5 Permits for Research
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6.2.6 Material transfer agreements, stewardships & ownership-related information (excluding ABS)
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6.2.7 Transport Documents
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6.3 A set of 38 Document Types
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7 Typology of Legal/Contractual Terms for Biodiversity Specimens
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7.1 Addressing a problem: uniform use-terms are missing in permit vocabulary
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7.2 Identifying a backbone: five types of lawful sources, their characteristics, plus expert opinions
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7.2.1 Lawful sources
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7.2.2 Characteristics of lawful sources
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7.2.3 Expert opinions
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7.3 Describing terms for biodiversity specimens
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7.3.1 Indicating the lawful source for each legal/contractual term
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7.3.2 Legal/contractual terms for actions in the past and/or future
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7.3.3 The legal characteristics of every term
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7.4 The Typology: A set of 87 legal/contractual terms for biodiversity specimens
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8. The DiSSCo openDS specification and event-based data model
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8.1 The open Digital Specimen specification
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8.2 Transactional model
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9 Extending DiSSCo’s basic model by proposed components for conditions
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9.1 Outline of a technical integration of conditions into the transactional model
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9.2 Transforming linked legal documents into machine-actionable information
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9.3 Transforming concepts into code: an ELViS use case
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9.4 Next steps: Further development of the openDS specification and adopting ODRL for the biodiversity domain
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10 Future development
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Glossary of terms used in the Typologies
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Acknowledgements
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References
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Supplementary files
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Endnotes
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